Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) AT3G01190 370 / 6e-129 Peroxidase superfamily protein (.1) AT1G05250 363 / 6e-126 Peroxidase superfamily protein (.1) AT1G05240 363 / 6e-126 Peroxidase superfamily protein (.1) AT1G05260 329 / 1e-112 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT4G11290 316 / 3e-107 Peroxidase superfamily protein (.1) AT3G21770 306 / 2e-103 Peroxidase superfamily protein (.1) AT5G64120 271 / 2e-89 Peroxidase superfamily protein (.1) AT2G39040 263 / 4e-86 Peroxidase superfamily protein (.1) AT2G41480 254 / 7e-83 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G122351 [exp] 644 / 0 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 644 / 0 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 644 / 0 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 620 / 0 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 600 / 0 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.011G027300 [exp] 362 / 2e-125 AT3G01190 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.019G063201 [exp] 361 / 6e-125 AT3G01190 412 / 4e-145 Peroxidase superfamily protein (.1) Potri.004G023200 [exp] 343 / 3e-118 AT3G01190 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.004G023100 [exp] 342 / 2e-117 AT3G01190 403 / 1e-141 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018374 [exp] 376 / 8e-131 AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1) Lus10007638 [exp] 367 / 2e-127 AT3G01190 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10006756 [exp] 346 / 5e-119 AT3G01190 379 / 3e-132 Peroxidase superfamily protein (.1) Lus10027164 [exp] 339 / 3e-116 AT1G05260 463 / 3e-165 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10039680 [exp] 334 / 3e-114 AT1G05260 458 / 3e-163 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10015127 [exp] 330 / 8e-113 AT1G05260 444 / 7e-158 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10027163 [exp] 328 / 5e-112 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10039681 [exp] 328 / 9e-112 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1) Lus10031548 [exp] 326 / 4e-111 AT1G05260 441 / 1e-156 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10032926 [exp] 270 / 4e-89 AT1G05260 292 / 5e-98 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.007G122301.1 pacid=42765318 polypeptide=Potri.007G122301.1.p locus=Potri.007G122301 ID=Potri.007G122301.1.v4.1 annot-version=v4.1 ATGGCTATTCAAAAGCTTTTCGCGGTCTGCTTTCTTCAACTCGTTTTCGCCTTTTTGCTTGCAGGCCTCACTAATGCAGGGGGGCTGCAACTCGGATTCT ACCAGAGAGCATGTCCTGATGCAGAGCTTATAGTCCATCAAACTCTTTATCGTTACGTCTCTAGGGACCGAACCCTTGCTGCTCCTCTGCTACGAATGCA TTTCCATGATTGCTTTATCAGGGGATGTGAGGGTTCTGTGCTCCTAAGTTCTACAAAGAATAATCAAGCTGAGAAAGACGCCATCCCAAATAAAACCTTA AGAGGGTTCAATGTCATTGATGCTGTAAAATCAGCACTAGAAAAGAAGTGTCCTGGTGTGGTTTCCTGTGCCGATATCTTGGCCTTGGTTGCTCGTGACG CGGTTCTAATGATTGGCGGACCACGTTGGGATGTTCCCACAGGACGCAGAGACGGAAGGGTGTCGATTGCCAACGAGGCTTTATTCAATTTACCATCTCC TTTTGCCAACATAACTGTCCTGAAACAACAATTTGCTGCAACGGGTTTAAGTGTAAAGGACCTTGCAGTTTTATCAGGAGGACACACCATAGGAATTGGA CACTGTACCATAATCTCGAACAGGTTGTACAATTTCACAGGCAAGGGAGATACTGACCCTTCATTGGACCCAAGATACGCTGCTCAACTGAAGAATAAAT GTAAGCCTGGAAACTCCAACACAGTCGTTGAGATGGACCCTGGTAGCTTCAAGTCTTTCGACGAAGATTACTACAACATTGTAGCTAAAAGAAGAGGGCT ATTCCGATCTGATGCAGCTCTTCTTGACGATGCTGAAACAAGAGGCTATGTCAAATTTCAGTCAATGACACAGGGATCCACTTTTGCACAAGATTTTGCT GAATCCATGGTGAAAATGGGTTACATTGGAGTCCTGACCGGCGAACAAGGCGAAATCAGGAAACATTGTGCTGTTGTGAATTAA
AA sequence Show only first row Show all	>Potri.007G122301.1 pacid=42765318 polypeptide=Potri.007G122301.1.p locus=Potri.007G122301 ID=Potri.007G122301.1.v4.1 annot-version=v4.1 MAIQKLFAVCFLQLVFAFLLAGLTNAGGLQLGFYQRACPDAELIVHQTLYRYVSRDRTLAAPLLRMHFHDCFIRGCEGSVLLSSTKNNQAEKDAIPNKTL RGFNVIDAVKSALEKKCPGVVSCADILALVARDAVLMIGGPRWDVPTGRRDGRVSIANEALFNLPSPFANITVLKQQFAATGLSVKDLAVLSGGHTIGIG HCTIISNRLYNFTGKGDTDPSLDPRYAAQLKNKCKPGNSNTVVEMDPGSFKSFDEDYYNIVAKRRGLFRSDAALLDDAETRGYVKFQSMTQGSTFAQDFA ESMVKMGYIGVLTGEQGEIRKHCAVVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15180			Peroxidase superfamily protein...		Potri.007G122301 [exp]	0	1
AT5G15180			Peroxidase superfamily protein...		Potri.007G122250 [exp]	2.00	0.9989
AT5G15180			Peroxidase superfamily protein...		Potri.007G122401 [exp]	3.00	0.9978
AT3G05640			Protein phosphatase 2C family ...		Potri.010G006200 [exp]	3.16	0.9946
AT5G15180			Peroxidase superfamily protein...		Potri.007G122351 [exp]	3.46	0.9958
AT2G38940		PHT1;4, ATPT2	ARABIDOPSIS THALIANA PHOSPHATE...		Potri.010G072000 [exp]	4.24	0.9862	Pt-PT2.8,PtrPHT1-1
AT2G01900			DNAse I-like superfamily prote...		Potri.010G101700 [exp]	4.89	0.9873
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Potri.001G069650 [exp]	10.19	0.9813
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.006G272500 [exp]	10.48	0.9846
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Potri.019G023600 [exp]	11.48	0.9817
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.002G039600 [exp]	11.48	0.9840

Compare expression of checked genes

Potri.007G122301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.