Plant FIBer expression Database

Pt-ICL1.2 (Potri.007G122900) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-ICL1.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G21720 951 / 0 ICL isocitrate lyase (.1)
AT1G21440 47 / 2e-05 Phosphoenolpyruvate carboxylase family protein (.1)
AT1G77060 47 / 2e-05 Phosphoenolpyruvate carboxylase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G036900
[exp]
1088 / 0 AT3G21720 924 / 0.0 isocitrate lyase (.1)
Potri.002G231000
[exp]
45 / 0.0002 AT2G43180 589 / 0.0 Phosphoenolpyruvate carboxylase family protein (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015122
[exp]
949 / 0 AT3G21720 1003 / 0.0 isocitrate lyase (.1)
Lus10031552
[exp]
943 / 0 AT3G21720 998 / 0.0 isocitrate lyase (.1)
Lus10026743
[exp]
44 / 0.0003 AT2G43180 600 / 0.0 Phosphoenolpyruvate carboxylase family protein (.1.2.3.4)
Lus10025529
[exp]
44 / 0.0003 AT2G43180 608 / 0.0 Phosphoenolpyruvate carboxylase family protein (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0151 PK_TIM PF00463 ICL Isocitrate lyase family
Representative CDS sequence
>Potri.007G122900.1 pacid=42765900 polypeptide=Potri.007G122900.1.p locus=Potri.007G122900 ID=Potri.007G122900.1.v4.1 annot-version=v4.1
ATGGAGGAAGAAGGGAGGTTTGAAGCCGAAGTTGCAGAGGTGCAAGCATGGTGGAACTCGGAGAGGTTCAAGCTAACCCGCAGACCATACTCAGCAAGAG
ATGTTGTGGCTTTAAGAGGCAACCTAAAGCAAAGCTATGGCTCGAATGATATGGCCAAGAAGCTGTGGAGAACTCTCAAGACTCACCAAGCCAATGGCAC
TGCCTCTAGGACTTTTGGTTCCCTTGACCCTGTCCAAGTGGCCATGATGGCTAGGCACTTGGACAGCATTTATGTTTCCGGTTGGCAGTGCTCCTCTACA
CACACCAGTACCAATGAACCAGGTCCTGACCTTGCTGATTACCCCTATGACACAGTCCCTAACAAAGTAGAACATCTGTTCTTTGCACAACAATATCATG
ACAGGAAGCAAAGAGAAGCAAGAATGAACATGAGCCGTGAGGAGAGGGCTAGGACCCCATATGTTGATTACTTGAAGCCAATAATAGCTGATGGGGATAC
TGGTTTTGGAGGCACTACAGCAACTGTTAAGCTTTGCAAGCTCTTTGTGGAGCGTGGTGCTGCTGGTGTCCATATTGAGGATCAGTCCTCTGTGACCAAA
AAATGTGGTCATATGGCTGGTAAGGTGCTTGTTGCTATTAGTGAGCACATTAACAGGCTTGTCGCTGCAAGGCTGCAATTTGATGTTATGGGGGTGGAGA
CAGTGTTGGTAGCTAGGACTGATGCAGAAGCAGCTAATTTGATCCAAACCAATGTGGACGCTAGAGATCACCAGTTCATTTTGGGTGCCACTAATCCAAA
TCTTAGAGGGAAAAATTTGGCCAATCTTTTGTCAGAAGCAATGGCTGCTGGTAAAACTGGAGCTGAACTTCAAGCCCTTGAGGACAATTGGCTTGCAACG
GCACAACTCAAGACATTTTCTGAGTGCGTTACAGACGCAATCAAGAGTATGAATATTGGAGAGTATGAGAAGGAGAGGAGATTGAATGAATGGATGAACC
ATTCTAGCTATGATAAGTGCCTGTCCCATGAACAAGGCCGAGAGATTGCTGAAAGATTGGGTCTTAACAATCTTTTCTGGGACTGGGACTTGCCTAGGAC
CAGAGAAGGGTTCTATAGGTTTAGAGGGTCTGTGGATGCGGCTGTTGTTCGTGGCAGGGCTTTTGCTCCACATGCTGATCTTATTTGGATGGAGTCTGCG
AGCCCAGATTTGGCTGAGTGCACCAAGTTTGCAGAAGGATTGAAGTCAATGCATCCTGAGATCATGTTGGCCTATAATCTTTCCCCATCTTTCAACTGGG
ATGCATCTGGTATGACCGATGAACAAATGAGAGATTTCATTCCTAGGATTGCTAAGTTGGGTTACTGCTGGCAGTTCATTACACTGGCAGGTTTCCATGC
TGATGCACTGGTCACCGATACTTTTGCAAGAGATTATGCTAAGAGGGGAATGTTGGCCTATGTAGAGAGGATCCAGAGGGAGGAGAGGAAAAATGGAGTT
GACACCCTTGCACATCAGAAATGGTCCGGTGCAAATTACTACGATCGGTATCTGAAGACTGTCCAGGGAGGCATTTCCTCCACTGCAGCCATGGGCAAAG
GAGTGACCGAGGAGCAATTCAAAGAGACATGGACTAGGCCAGGAGCCATGGACATGGGGGGTGCAGGAACTGAGGTGGTTGCTAAGTCAAGGATGTAA
AA sequence
>Potri.007G122900.1 pacid=42765900 polypeptide=Potri.007G122900.1.p locus=Potri.007G122900 ID=Potri.007G122900.1.v4.1 annot-version=v4.1
MEEEGRFEAEVAEVQAWWNSERFKLTRRPYSARDVVALRGNLKQSYGSNDMAKKLWRTLKTHQANGTASRTFGSLDPVQVAMMARHLDSIYVSGWQCSST
HTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMNMSREERARTPYVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTK
KCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAANLIQTNVDARDHQFILGATNPNLRGKNLANLLSEAMAAGKTGAELQALEDNWLAT
AQLKTFSECVTDAIKSMNIGEYEKERRLNEWMNHSSYDKCLSHEQGREIAERLGLNNLFWDWDLPRTREGFYRFRGSVDAAVVRGRAFAPHADLIWMESA
SPDLAECTKFAEGLKSMHPEIMLAYNLSPSFNWDASGMTDEQMRDFIPRIAKLGYCWQFITLAGFHADALVTDTFARDYAKRGMLAYVERIQREERKNGV
DTLAHQKWSGANYYDRYLKTVQGGISSTAAMGKGVTEEQFKETWTRPGAMDMGGAGTEVVAKSRM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G21720 ICL isocitrate lyase (.1) Potri.007G122900
[exp]
0 1 Pt-ICL1.2
AT3G21720 ICL isocitrate lyase (.1) Potri.017G036900
[exp]
1.00 0.9996 ICL1.1
AT3G18830 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MO... Potri.006G158700
[exp]
2.00 0.9900
AT3G28150 AXY4L, TBL22 ALTERED XYLOGLUCAN 4-LIKE, TRI... Potri.011G144100
[exp]
5.19 0.9851
Potri.006G271586
[exp]
7.07 0.9643
AT1G78980 SRF5 STRUBBELIG-receptor family 5 (... Potri.014G001200
[exp]
11.48 0.9821
Potri.012G100300
[exp]
14.28 0.9640
Potri.006G271692
[exp]
14.83 0.9799
AT5G06370 NC domain-containing protein-r... Potri.013G043100
[exp]
15.29 0.9803
AT5G63160 BT1 BTB and TAZ domain protein 1 (... Potri.015G087700
[exp]
15.87 0.9678
AT3G63095 Tetratricopeptide repeat (TPR)... Potri.014G139100
[exp]
18.97 0.9721

Potri.007G122900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.