Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07040 270 / 6e-77 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G53350 246 / 2e-68 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G35450 232 / 6e-64 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 228 / 1e-62 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G59780 221 / 3e-60 NB-ARC domain-containing disease resistance protein (.1) AT3G46710 213 / 1e-57 NB-ARC domain-containing disease resistance protein (.1) AT5G48620 211 / 8e-57 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58390 204 / 2e-54 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46530 200 / 3e-53 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT1G50180 199 / 7e-53 NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G150200 [exp] 327 / 2e-97 AT5G43470 420 / 2e-132 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) Potri.001G134475 [exp] 308 / 7e-91 AT3G07040 413 / 1e-129 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134400 [exp] 308 / 2e-90 AT3G07040 427 / 3e-134 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G149800 [exp] 306 / 2e-90 AT5G43470 421 / 4e-133 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) Potri.001G134601 [exp] 294 / 2e-86 AT3G07040 443 / 2e-142 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134300 [exp] 296 / 4e-86 AT3G07040 487 / 2e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134450 [exp] 294 / 1e-85 AT3G07040 488 / 1e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099000 [exp] 291 / 2e-84 AT3G07040 479 / 2e-154 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099100 [exp] 290 / 4e-84 AT3G07040 482 / 8e-156 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014922 [exp] 243 / 1e-67 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 243 / 2e-67 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10027281 [exp] 240 / 1e-66 AT3G07040 459 / 5e-147 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10038983 [exp] 239 / 7e-66 AT3G07040 468 / 5e-150 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 237 / 3e-65 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 229 / 9e-63 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 226 / 1e-61 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 225 / 4e-61 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014712 [exp] 220 / 1e-59 AT3G07040 492 / 3e-159 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 144 / 6e-35 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13191 [poplar] [flax] AAA_16 AAA ATPase domain
Representative CDS sequence Show only first row Show all	>Potri.007G123200.1 pacid=42766806 polypeptide=Potri.007G123200.1.p locus=Potri.007G123200 ID=Potri.007G123200.1.v4.1 annot-version=v4.1 ATGGATGCTGAATGGGTAGCTTTGCTTTTGATACAGAAATTCCAAGCTCTTCTTCTAGATGGAGAAGAAACTATTACCAATCCCAGCTTGAGAAATCAAG TACAGGAAGCAACCAACAAGCTCATTTTACTTCACCAATCTATAAGAGTTTCAACAAATGAAGAGCAGACAGAGAGGCTTCTACATGCATTTTACTCTGC CGAAGATGCCGCTGATACCTTCCTTGCAAGAACACTACTCTTGCAAAGGCAGAAACTGAGGGGTTACAATGAGACTATATGTCAACCCTTTAGAGGCTTT AAAGACTTCTGGATCCAATTTTTGTTTACTGTTCAAATCAAGAAATTCATGTCTCTGATAGAACATGCTGGTTGCAATAACAACATTTCTGGGTCAAGCT TACAAGATGGAACTATTCTGAATCCAAGGCATCAGGGAACAAGAAGAGCAAGTTCTTATTTAGAAGTGGGTAAAGATGTTGTTGGTCTTGGTGATCAAGC GAAGGAGTTGGAAGAGCGCCTAATTTGCACGAATGAAAACATTCAAGCTGCTACTCATGAACTCATTTCAGTGGCGGGCGAGAGAGGTTCAGGCAAGACA ACTCTTGTCAGGATGGTGTATGAAAAGGTAAGGATTAAAAAGCATTTTAAGTACTGTATCTGGGTTAATGTTAGTAATTATGTGGTCAAAGGTAGAGATG TTGTGCTTGACATGCTGAAACAAGTTGATGAGGTATTAGCTGAAGCAGAAGAGTCCCTTTTTGAGCAAGAATTGGTGTCTAGACTGGGTGAAGTTTTGAG GAAGGACAGGTATCTTGTTGTTGTTGATGATGTTGGGGCACCTGGAGTGTGGGAAAGGTTACAAAATGTGATCCCAAACTCAGAAAATGGTAGCAGGATA GTTGTTACTACTCGCAATATGGATGTAGCAGCATTTGCTTCTACAACTCTACAGATGGGCAGATTGAGCAATGAGGAGAGCTGGGAGCTGTTCTTAAAGA AGGTATGTTCAGCTGAAGATACTTTAAGTAAAAATCTGGATTTGAGTTTGATCACATTCAAGGAGAAAATCTTGAAACTATGTGATGGTTTACCTTTGCC AATTAGCTTGATGGGAGGTATCTTATCTAAGGTGGAGTTGAGCAATAGTGAATGGTCAAGAGTGATTGAGGATGCAGATAATCTTCATGGAGATATACTT GCTTTAAGCTATAAAGAACTTCCATATCGAATGAAGCCTTGTTTTCTTTACATGGGGATGTTCCCGAAAGGGTTTGAGGTTCCTGTGAGGAGATTGTTTC AGCTATGGATTGCTGAGAGACTGGTGACACCCTCACGTTCAGGGGAATTAGGCCCTGGAGAAGTGACAGAAGTGTTTTTGGAAGAACTAATTTACAGGAA CATGATTGAAGTTGCAAGATGGAGGTCTGATGGTATCCCCAAAACATGTAGAATGCCAGGTGCCATATATGATATTTTCTCTCCAAAAGCAGCAGCAGAA ATAGGATTGTTTTACATCCATTGCAAGTCACATTATTCATCTGGAGACCAACCATCATTCCCGGTCAGGCGACTTGCATCATACTTGAGCATCAAGAACT ACCCTTCCTTGGATTGGTACACTCGAAGTCTCCGGTCTTACATTTCCTTCAGCACACATAAAGGGGGTATACCTGCTCGAGAAATAGGTAAGTTTCTGAA CAAGATAATCCTAAGAAGAGACGTAGGATGGTTGACTGTACTTGACCTTGAAGGTGTATACAAACCTAGGCTGCCTAAATCATTTCAAAAACTGCTGAAC CTGAAGCATCTAGGTTTAAGATCAACAGCTTTAGAGTCACTCCCAGAGTCAGTTTGTGATCTGCCATGCTTGGAAACTTTAGATGTGAAGCACACTATGA TAACCTCATTGCCTGGTTCCATTTGGACTGCGAAAAACTTGCAACATCTTTATATGGATTGGATTCATTTTGATGATATTTCCATTCAAGTATCATCTGA TTCAGAGCCTTTATCCAAGCTCCAGACCTTATGGGGGCTGTCTATAAGTCAACACAGCCCCATTTTAAATTCATTATTCAAGATAACATGTCTTAGAAAG TTGGCCTTGAGATTCAGTTCAACATCACAAGAGCCAATAAATAACTGGATTTCACAACTCACCACCCTTCAATCTCTACGGTTGAGATCAATTAAAAACA CCGGCGAGCGTGGATCCATCAAATTGAGTGCCTTGTCAGACCATCAAAAACTCCTGGACTTGTATTTGCTTGGAGTGTTACCAAGGCCAATTAACATCAA ACTACTTCCTCCAAACCTTAAAATCCTCACTTTATCAATGTCACAACTTAGAAAAGACCCGATGCGGACGCTAGGACAGCTACCTTACCTCAACATCCTT AGGCTTCTTGCTGATTCCTACATGGGGGAAGAACTTGCATGTTACCAAGGAGGATTTCCTCAACTCCATGTCCTGAAACTCTGGAAGCTGGTGGAGCTAA GGGAGTTGATTGTGAAGGAAGGAGCCATGCCTTGCCTTAAACAAGTAGAGATTAGAGCCTGCAAAAGACTAGAGAAGCTTGAGGGATTAAGCAAACTGAC CACATTGAAGGAATTAATACTGACGAACATGCCATCACAGTTTGCAAAAGAAGTTAAAGAAAACATGGGCACAGATGTGTTTGTCAAAGAAAATGAATGG AAATCTTATCCTTTGCTGGCCTAA
AA sequence Show only first row Show all	>Potri.007G123200.1 pacid=42766806 polypeptide=Potri.007G123200.1.p locus=Potri.007G123200 ID=Potri.007G123200.1.v4.1 annot-version=v4.1 MDAEWVALLLIQKFQALLLDGEETITNPSLRNQVQEATNKLILLHQSIRVSTNEEQTERLLHAFYSAEDAADTFLARTLLLQRQKLRGYNETICQPFRGF KDFWIQFLFTVQIKKFMSLIEHAGCNNNISGSSLQDGTILNPRHQGTRRASSYLEVGKDVVGLGDQAKELEERLICTNENIQAATHELISVAGERGSGKT TLVRMVYEKVRIKKHFKYCIWVNVSNYVVKGRDVVLDMLKQVDEVLAEAEESLFEQELVSRLGEVLRKDRYLVVVDDVGAPGVWERLQNVIPNSENGSRI VVTTRNMDVAAFASTTLQMGRLSNEESWELFLKKVCSAEDTLSKNLDLSLITFKEKILKLCDGLPLPISLMGGILSKVELSNSEWSRVIEDADNLHGDIL ALSYKELPYRMKPCFLYMGMFPKGFEVPVRRLFQLWIAERLVTPSRSGELGPGEVTEVFLEELIYRNMIEVARWRSDGIPKTCRMPGAIYDIFSPKAAAE IGLFYIHCKSHYSSGDQPSFPVRRLASYLSIKNYPSLDWYTRSLRSYISFSTHKGGIPAREIGKFLNKIILRRDVGWLTVLDLEGVYKPRLPKSFQKLLN LKHLGLRSTALESLPESVCDLPCLETLDVKHTMITSLPGSIWTAKNLQHLYMDWIHFDDISIQVSSDSEPLSKLQTLWGLSISQHSPILNSLFKITCLRK LALRFSSTSQEPINNWISQLTTLQSLRLRSIKNTGERGSIKLSALSDHQKLLDLYLLGVLPRPINIKLLPPNLKILTLSMSQLRKDPMRTLGQLPYLNIL RLLADSYMGEELACYQGGFPQLHVLKLWKLVELRELIVKEGAMPCLKQVEIRACKRLEKLEGLSKLTTLKELILTNMPSQFAKEVKENMGTDVFVKENEW KSYPLLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.007G123200 [exp]	0	1
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Potri.006G097300 [exp]	1.41	0.8992
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.002G055000 [exp]	4.69	0.8617
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Potri.001G252400 [exp]	8.48	0.8856
AT5G41620			unknown protein		Potri.001G096200 [exp]	12.44	0.8068
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Potri.002G058700 [exp]	15.09	0.8947	ATGSL11.2
AT4G31980			unknown protein		Potri.003G209300 [exp]	15.87	0.8979
AT1G29820			Magnesium transporter CorA-lik...		Potri.001G353000 [exp]	16.79	0.8248
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Potri.006G143200 [exp]	18.76	0.8264
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.015G031600 [exp]	19.62	0.8898
AT3G60320			Protein of unknown function (D...		Potri.014G047400 [exp]	20.04	0.8340

Compare expression of checked genes

Potri.007G123200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.