Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43200 677 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 607 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00750 603 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G10440 602 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 598 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G26850 581 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G18030 545 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G19120 484 / 2e-165 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G31850 479 / 3e-163 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G00740 446 / 4e-150 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G154400 [exp] 634 / 0 AT4G00750 944 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 634 / 0 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 629 / 0 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075700 [exp] 625 / 0 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G137300 [exp] 611 / 0 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G139000 [exp] 603 / 0 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G146400 [exp] 580 / 0 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.003G087600 [exp] 573 / 0 AT4G18030 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G147800 [exp] 572 / 0 AT1G26850 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017357 [exp] 630 / 0 AT1G33170 948 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10010152 [exp] 625 / 0 AT1G33170 952 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008298 [exp] 622 / 0 AT4G10440 957 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10005764 [exp] 589 / 0 AT2G45750 811 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036747 [exp] 569 / 0 AT1G26850 1042 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10011045 [exp] 569 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10003014 [exp] 569 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10037180 [exp] 568 / 0 AT1G26850 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10030479 [exp] 565 / 0 AT1G26850 1057 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10012830 [exp] 564 / 0 AT1G26850 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03141 [poplar] [flax] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.007G123500.1 pacid=42764842 polypeptide=Potri.007G123500.1.p locus=Potri.007G123500 ID=Potri.007G123500.1.v4.1 annot-version=v4.1 ATGGCAAAACCAAACCCTCTCAAGCATCCCCTTTTAAAATACTTCATCTCCATTCTCCTTGTCTCTCTCTCCTATATTCTTGGTATCTACACCAGCTCCA ACAATTCTACTAGCCCCCCTCTTCAAGAGCAGAAACAGCCACTTAACTGTCACCAACTTAACTTCTCATTGTCTGTTCTTGACTTTGAATCACACCACAC ACTCTCTCTCCCTCAAGAACCTCTCAGAAACCTACAATTCTTCAACTTCTGCCCTCCAAACTTCACCAACTACTGTCCTTGCCATGATCCATCAAGAGAA ACGGATTTTACTGCCGAAAGATTCTTTAGTAGAGAGAGACATTGCCCTGAACCTTATGAAAAACCAATGTGTTTGGTTCCAAGGCCTGCTGGGTACAAGA GACCGTTTTCATGGCCAAAGAGTAGGGACTACGCTTGGTTCAAGAACCTGCCTTTTAAGGAGCTGAGTGAGGTCAAGAAAACACAGAATTGGGTTAGATT GGAAGGTGATTTGCTGGTTTTTCCAGGTGGTGGGACTTCATTTCGAAAAGGAGTTAAGGGTTATGTTGATGAGATTAAACGTTTTGTGCCTTTGAAATCT GGGAGCATAAGGACCGTTCTTGATGTTGGATGTGGGGTTGCAAGCTTTGGAGCACATTTAATGGATTATAACATCCTCACAATGTCAATAGCGCCAAGTG ATAAACATGAAGCTCAATTACAGTTTGCACTGGAAAGAGGAGTTCCAGCCATGCTTGGTATACTTAGCATCCATCGGTTGCCATTCCCTTCAAGATCATT TGATATGGCTCACTGTGCCAGATGCTTGGTTCCATGGACTAAATATGATGGACTTTACCTCATGGAAATTGACCGTGTGTTGCGTCCTGGTGGTTACTGG ATATTTTCTGGACCACCTATAAATTGGAAGGCTAATTACAAGGGGTCAGAGGTGGGAGCTCAGGAGTTGGAGCAAGAGCAAGCAAGGTTGGAAGATCTTG CTGTGCGACTGTGCTGGAAGAAAGTTGCAGAGAAGGGAGCAATTGCTGTGTGGAGAAAACCAAATAACCACATTCACTGCATCATAAAGTCGAGGATTTG GAAATCTTCCCGGTTTTGTATTAACAGCGATCCTGATGCTGGTTGGTATAAAAAGATGAAACCATGTATTACTCCTCTTCTAAATGTAACAGATATCCAC GACATCTCAGGGGGTTCTCTTGAAAAATGGTCCAAAAGGTTGAATATTGCTCCTCCTAGGACTAAAAGTGAAGGAATTTCAGGTGCGGCCTTCGAAGGAG ATAATCAGTTATGGAAAAGAAGAGTTAGACACTATGGGATCATACTCAAATCTCTCTCCAGAGGCAGATACAGAAACATAATGGATATGAATGCTGGCAT AGGAGGTTTCGCTGCAGCACTGACTCAATATCCAGTTTGGGTAATGAATGTAGTACCTTATGATGCTAAACAGAACAACCTTAGCATTGTGTACGATCGT GGCCTCATTGGAACATACATGAATTGGTGTGAAGCCTTCTCAACATACCCTCGGACGTACGACTTGATACATGCTCATGGTGTATTCAGCATGTATATGG ACAAGTGCAGCATTCTCGATATCCTTCTGGAGATGCACCGGATTCTTCGTCCAGAAGGAGCTGTTATAATAAGAGATCACGTTGACATCATTGTTGAAGT GAAAGGTATTGCAGAAAAGATGAAATGGAATGGCAGGATTTTACACAGTGAAAATGGAGCTTTCCACCCAGAGAAAATACTATTGATTGACACTTGTTGT TAG
AA sequence Show only first row Show all	>Potri.007G123500.1 pacid=42764842 polypeptide=Potri.007G123500.1.p locus=Potri.007G123500 ID=Potri.007G123500.1.v4.1 annot-version=v4.1 MAKPNPLKHPLLKYFISILLVSLSYILGIYTSSNNSTSPPLQEQKQPLNCHQLNFSLSVLDFESHHTLSLPQEPLRNLQFFNFCPPNFTNYCPCHDPSRE TDFTAERFFSRERHCPEPYEKPMCLVPRPAGYKRPFSWPKSRDYAWFKNLPFKELSEVKKTQNWVRLEGDLLVFPGGGTSFRKGVKGYVDEIKRFVPLKS GSIRTVLDVGCGVASFGAHLMDYNILTMSIAPSDKHEAQLQFALERGVPAMLGILSIHRLPFPSRSFDMAHCARCLVPWTKYDGLYLMEIDRVLRPGGYW IFSGPPINWKANYKGSEVGAQELEQEQARLEDLAVRLCWKKVAEKGAIAVWRKPNNHIHCIIKSRIWKSSRFCINSDPDAGWYKKMKPCITPLLNVTDIH DISGGSLEKWSKRLNIAPPRTKSEGISGAAFEGDNQLWKRRVRHYGIILKSLSRGRYRNIMDMNAGIGGFAAALTQYPVWVMNVVPYDAKQNNLSIVYDR GLIGTYMNWCEAFSTYPRTYDLIHAHGVFSMYMDKCSILDILLEMHRILRPEGAVIIRDHVDIIVEVKGIAEKMKWNGRILHSENGAFHPEKILLIDTCC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43200			S-adenosyl-L-methionine-depend...		Potri.007G123500 [exp]	0	1
AT3G59680			unknown protein		Potri.019G112300 [exp]	2.64	0.8853
AT5G10080			Eukaryotic aspartyl protease f...		Potri.005G079900 [exp]	5.09	0.8770
AT1G01225			NC domain-containing protein-r...		Potri.014G101300 [exp]	5.65	0.8948
AT2G25270			unknown protein		Potri.006G258700 [exp]	6.24	0.8912
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Potri.002G061900 [exp]	8.83	0.8950	KDSA.1
AT4G33945			ARM repeat superfamily protein...		Potri.009G106100 [exp]	11.22	0.8874
AT2G25220			Protein kinase superfamily pro...		Potri.018G022300 [exp]	11.48	0.8795
AT3G54030			Protein kinase protein with te...		Potri.016G105800 [exp]	12.24	0.8879
AT5G50840			unknown protein		Potri.010G219700 [exp]	13.22	0.8618
AT2G41820			Leucine-rich repeat protein ki...		Potri.016G055400 [exp]	14.07	0.8807

Compare expression of checked genes

Potri.007G123500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.