Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06710 1248 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G06920 302 / 3e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 282 / 5e-83 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65560 288 / 1e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 278 / 7e-82 RPF2 rna processing factor 2 (.1) AT1G63130 276 / 4e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63400 275 / 4e-81 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 276 / 7e-81 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 275 / 1e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G31850 283 / 6e-80 PGR3 proton gradient regulation 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G105400 [exp] 321 / 8e-94 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 312 / 2e-93 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G014100 [exp] 317 / 3e-93 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 307 / 1e-91 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G105700 [exp] 304 / 3e-89 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G032600 [exp] 296 / 2e-88 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G264800 [exp] 297 / 8e-85 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.005G050180 [exp] 284 / 5e-84 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.001G236800 [exp] 291 / 7e-84 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026747 [exp] 1424 / 0 AT1G06710 1190 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025533 [exp] 1154 / 0 AT1G06710 980 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 301 / 3e-88 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038974 [exp] 290 / 6e-85 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10043417 [exp] 291 / 5e-84 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042529 [exp] 291 / 5e-83 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 288 / 1e-82 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 284 / 3e-81 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014245 [exp] 276 / 3e-81 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10026558 [exp] 283 / 5e-81 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.007G123600.1 pacid=42766433 polypeptide=Potri.007G123600.1.p locus=Potri.007G123600 ID=Potri.007G123600.1.v4.1 annot-version=v4.1 ATGAAAAGGAGGGTCTTAACCAAACTCCTTTCTCACTTAAATCCTTATCTTTCCTCTCGTAAATCAAAACCCCTTTCCCTTTCATCATTTCACTCTCAAA GTTACAAACTTTCCAGCCAAAATCCCAAAATTCAACGCCAAAACTCAACCTTTATAACTACCAGATTCACCTCCACCTCTCCAAGTGACAATCTTGAAGG ACTGGTTGATCCAAATGACCCTTTTTTGCAAGTGGAATCGCGGGTCGAGGCCTTTTCTAGCGAAGAATTCGCAATTTTACGCGATTCTTTGTTAAGTCCT AGTGAAGATAGGCAAAGATTTGATCTTGGTAAGTGTTCAAATGAAGCTACTTTGATTGCAAATGTGATTTTGAATAATAATGATGGGTTTGGGAACCAGA CCCTGAAATTGTTAAGAGAGCATAGGGAGAAATTGAATCCAAATTTGGTTGTTGAGGTTTTGAATATAGTTAAAATCCCTGAATTGTGTGTTAATTTTTT TATTTGGGCTGGTAGGCAAATTGGGTATTATCACACTTTGCCCGTGTACAATGCTTTGTTAGAGATATTAGAAAGTAGTAGTAATAATAGTATTGATAGA GTACCAGAGAAATTTTTGCGTGAAATTATGGATGATGACAAGCAAGTGTTAGGGAAGTTGCTCAATGTATTGATTCGTAAATGTTGTCAAAATGGGTTGT GGAATGCTGCATTGGAGGAGTTAGGTAGGCTAAAGGATTTTGGGTATAAGCCGTCAAGGTTGACTTATAATGCTTTGGTTCAGGTGTTTTTAAGAGCTGA GAGATTAGATACTGCATATTTGGTTCATAGGGAGATGTCAACTATGGGGTATAGAATGGATGAGTTTACTTTGGGCTGTTTTGCGCATTCCCTTTGTAAA TCAGGAAAGTGGAGAGAAGCCTTGTCGTTACTAGAGAAGGAAGAATTTGTGCCTGATACAGTGCTTTATACGAAGATGATATCAGGGTTATGTGAAGCTT CGCTTTTTGAAGAAGCTATGGATTTTTTGACCAGGATGCGGGCTAGTTCTTGCCTTCCTAATGTTTTGACATATAGGATTTTGCTTTGTGGGTGTTTGAA TAAGGAAAAACTTGGTAGATGTAAGAGAATTCTTAGTATGATGATCACAGAGGGCTGTTATCCCAGTCCTAGGATATTTAATTCTCTTGTTCATGCTTAT TGCAGATCTGGAGATTATGCTTATGCCTATAAGTTGCTAAAGAAAATGGTGCAATGTGGGTGCCAGCCAGGTTATGTGGTTTACAATATATTGATTGGTG GTATTTGTAGCAGCGAGGAGCCAGGCAAGGATGTGCTAGACTTGGCTGAGAAAGCCTATGGTGAAATGCTTGAAGCAGGGGTTGTACTAAATAAGGTCAA CATCAGCAATTTTTCTCGATGTCTTTGTGGGATTGGAAAATTTGAGAAGGCATATAATGTTATCCGTGAAATGATGAGTAAGGGTTTTATACCTGATACC AGTACTTATTCAAAAGTGATTGGTTATTTGTGCAATGCATCCAAAGTAGAGAAGGCTTTTCAATTGTTTCAAGAAATGAAAAGGAATGGTATTGCTCCAG ACGTGTATGTATATACTACACTAATTGATAGTTTTTGTAAAGCTGGTTTTATAGAACAGGCTCGCAACTGGTTTGATGAAATGGAAAGAGATGGTTGTGC CCCAAATGTTGTGACTTATACTGCTCTTATACATGCTTACCTTAAATCTAGGAAGGTGTCTAAGGCAAATGAAGTTTATGAGATGATGCTGTCCAAAGGC TGTACTCCTAATATTGTCACGTATACAGCTTTAATCGATGGTCTATGTAAAGCAGGGAAGATTGAAAAAGCTAGCCAGATTTACAAAATAATGAAAAAGG AAAATGTGGAGATCCCAGATGTTGATATGCATTTCAGGGTTGTTGATGGTGCTTCAAATGAACCAAATGTCTTTACATATGGAGCTCTGGTTGATGGTTT GTGCAAAGCCTATCAGGTCAAAGAGGCACGGGATTTGCTAAAATCTATGTCAGTGGAAGGTTGTGAGCCAAACCATGTCGTATATGATGCCCTTATAGAT GGATGTTGCAAGGCTGGCAAGCTGGACGAAGCACAAGAAGTGTTTACTACGATGTTGGAGTGTGGGTATGACCCAAATGTATATACTTACAGCTCTTTGA TTGATAGGTTGTTTAAGGATAAACGGTTAGATCTTGCCTTGAAAGTCTTGTCCAAAATGCTAGAAAATTCATGTGCTCCCAATGTTGTTATTTACACCGA GATGATTGACGGCCTCTGCAAAGTCGGAAAGACAGATGAAGCTTACAAGCTTATGGTTATGATGGAAGAAAAAGGATGTAATCCAAATGTCGTAACTTAT ACTGCAATGATTGATGGCTTTGGAAAAGCAGGGAGAGTTGAAAAATGCCTTGAGCTGTTGCGACAAATGAGTTCCAAGGGCTGTGCTCCAAATTTTGTGA CCTATAGGGTTTTGATAAACCACTGCTGTTCTACTGGCCTTTTAGATGAGGCTCACAAACTTTTAGAAGAGATGAAACAGACATACTGGCCAAGACATGT AGCAGGTTATCGTAAAGTCATTGAAGGTTTCAATCGTGAATTTATAGCTTCTCTTTATCTTTCATTTGAGATAAGTGAGAATGATTCAGTGCCAGTTGCT CCAGTTTATAGAGTCCTGATTGATAATTTTATCAAGGCTGGAAGACTAGAGATTGCTCTTGAGCTGAATGAAGAGCTCTCATCATTTTCACCATTTTCCG CTGCCAATCAGAATATACACATTACTTTGATTGAGAATCTGTCACTTGCACATAAAGCTGATAAGGCTTTTGAGTTGTATGCGGACATGATCAGTAGGGG CAGTATTCCAGAGCTAAGCATTTTAGTTCACCTTATTAAAGGACTACTCAGAGTCAACAGATGGGAAGAAGCCTTGCAACTGTTAGATAGCATATGTCAA ATGGATATCCACTGGGTCCAAGAACAAGAAACTGCTCGTACAAGTTAG
AA sequence Show only first row Show all	>Potri.007G123600.1 pacid=42766433 polypeptide=Potri.007G123600.1.p locus=Potri.007G123600 ID=Potri.007G123600.1.v4.1 annot-version=v4.1 MKRRVLTKLLSHLNPYLSSRKSKPLSLSSFHSQSYKLSSQNPKIQRQNSTFITTRFTSTSPSDNLEGLVDPNDPFLQVESRVEAFSSEEFAILRDSLLSP SEDRQRFDLGKCSNEATLIANVILNNNDGFGNQTLKLLREHREKLNPNLVVEVLNIVKIPELCVNFFIWAGRQIGYYHTLPVYNALLEILESSSNNSIDR VPEKFLREIMDDDKQVLGKLLNVLIRKCCQNGLWNAALEELGRLKDFGYKPSRLTYNALVQVFLRAERLDTAYLVHREMSTMGYRMDEFTLGCFAHSLCK SGKWREALSLLEKEEFVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHAY CRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDT STYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKG CTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALID GCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTY TAMIDGFGKAGRVEKCLELLRQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEGFNREFIASLYLSFEISENDSVPVA PVYRVLIDNFIKAGRLEIALELNEELSSFSPFSAANQNIHITLIENLSLAHKADKAFELYADMISRGSIPELSILVHLIKGLLRVNRWEEALQLLDSICQ MDIHWVQEQETARTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06710			Tetratricopeptide repeat (TPR)...		Potri.007G123600 [exp]	0	1
AT1G55040			zinc finger (Ran-binding) fami...		Potri.013G022300 [exp]	2.82	0.9217
AT3G18840			Tetratricopeptide repeat (TPR)...		Potri.009G113500 [exp]	3.46	0.9155
AT4G30990			ARM repeat superfamily protein...		Potri.001G318800 [exp]	5.65	0.9085
AT1G74350			Intron maturase, type II famil...		Potri.005G063750 [exp]	5.74	0.9103
AT4G04670			Met-10+ like family protein / ...		Potri.004G015200 [exp]	5.74	0.8942
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Potri.011G049400 [exp]	6.32	0.9051
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Potri.005G180800 [exp]	6.48	0.9035	CHB904,CHB4.1
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Potri.001G341900 [exp]	7.34	0.8978
AT5G46920			Intron maturase, type II famil...		Potri.001G147801 [exp]	10.58	0.9018
AT5G46570		BSK2	BR-signaling kinase 2 (.1)		Potri.014G179300 [exp]	10.77	0.8711

Compare expression of checked genes

Potri.007G123600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.