Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PCBERp2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75280 284 / 5e-95 NmrA-like negative transcriptional regulator family protein (.1) AT1G75290 280 / 2e-93 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G39230 277 / 2e-92 NmrA-like negative transcriptional regulator family protein (.1) AT1G75300 271 / 5e-90 NmrA-like negative transcriptional regulator family protein (.1) AT1G19540 248 / 6e-81 NmrA-like negative transcriptional regulator family protein (.1) AT1G32100 223 / 5e-71 ATPRR1 pinoresinol reductase 1 (.1) AT4G13660 208 / 3e-65 ATPRR2 pinoresinol reductase 2 (.1) AT4G34540 202 / 3e-63 NmrA-like negative transcriptional regulator family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G103701 [exp] 430 / 1e-152 AT1G75280 271 / 4e-90 NmrA-like negative transcriptional regulator family protein (.1) Potri.013G103850 [exp] 428 / 7e-152 AT1G75280 272 / 2e-90 NmrA-like negative transcriptional regulator family protein (.1) Potri.019G078100 [exp] 291 / 5e-99 AT1G75280 169 / 9e-52 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118100 [exp] 286 / 8e-96 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 286 / 9e-96 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.002G034400 [exp] 277 / 1e-92 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.005G228700 [exp] 277 / 2e-92 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.011G168400 [exp] 274 / 1e-90 AT4G39230 448 / 2e-159 NmrA-like negative transcriptional regulator family protein (.1) Potri.007G036500 [exp] 253 / 1e-82 AT4G39230 407 / 1e-143 NmrA-like negative transcriptional regulator family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026348 [exp] 293 / 1e-98 AT4G39230 442 / 2e-157 NmrA-like negative transcriptional regulator family protein (.1) Lus10026350 [exp] 282 / 2e-94 AT4G39230 454 / 3e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10040442 [exp] 280 / 1e-93 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10042311 [exp] 279 / 4e-93 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1) Lus10026351 [exp] 272 / 3e-90 AT4G39230 481 / 4e-173 NmrA-like negative transcriptional regulator family protein (.1) Lus10023557 [exp] 276 / 6e-90 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10042313 [exp] 241 / 1e-78 AT4G39230 369 / 2e-129 NmrA-like negative transcriptional regulator family protein (.1) Lus10012143 [exp] 223 / 3e-71 AT1G32100 447 / 1e-159 pinoresinol reductase 1 (.1) Lus10010403 [exp] 217 / 1e-68 AT1G32100 446 / 1e-158 pinoresinol reductase 1 (.1) Lus10023558 [exp] 209 / 1e-65 AT4G34540 405 / 7e-143 NmrA-like negative transcriptional regulator family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01073 [poplar] [flax] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family
Representative CDS sequence Show only first row Show all	>Potri.007G123700.1 pacid=42765349 polypeptide=Potri.007G123700.1.p locus=Potri.007G123700 ID=Potri.007G123700.1.v4.1 annot-version=v4.1 ATGGCCTGTGAGAAGCGCAAGATACTAATATTTGGAGGGACTGGGTATCTTGGCTTACACATGATCAAGGCAAGCCTCTCGATGGGCCATCCAACCTACG CTTATGTTCGCCCTGTCAAACCATACACCAATCCTTCAAAGCTAGACCTCCTCAAGGAATTCGAATCCATGGGAGTCACTGTATTCCAAGGAGAGTTGGA AGAGCATGAGAAGCTTGTTTCAGCAGTAAAACAAGTAGATGTAGTGATTTCTACTCTTGCAGTTCCTCAGCATCTGGACCAACTCAAAATAATCAGTGCT ATGAAAGAAGCTGGTAACATCAAAAGGTTTGTGCCATCAGAATTTGGAAATGAGGTCGATAGAGTTAGTGGGCTGCCACCTTTTGAAACAGTGCTTGATA ACAAAAGGAAGATCAGGAGAGCATCAGAAGCTGCTGGACTTTCTTACACTTACGTCTCTGCAAACTCATTTGCTGCATATTTCGTGGATTACTTGCTCCA TCCCCATGAGAAACGAGAAGAAGTTCTTGTTTATGGAAGCGGTGAAGCCAAAGCTGTGTTGAATTACGAAGAGGATGTGGCAGCCTATACAGTGAAAGCA GCAACAGATCCAAGGGTTGCCAATCGTGTCATCATCTACAGGCCCCCTGGAAACATTGTCTCCCAGCTAGGTTTAATATCTTCTTGGGAGAAAAAGACTG GACGAACTCTCAAGAAAATCCATGTCCCTGAGGAAGAAATCGTGAAGCTCTCTGAGTCCTTGCCCTTCCCAGAAAACGTCCCACCGTCGATCCTGCACAA CATATTCATCAAAGGTGAGCAGGTGAGCTTTGAACTCACAGCAGATGATTTGGAGGCTTCCGAGTTATATCCTGACTACAAGTACACTTCCGTTGATAGT CTCCTCGACATCTGCTTGGTTAATCCCCCTAAGCCCAAATTAGCAGCATTCTCGTAA
AA sequence Show only first row Show all	>Potri.007G123700.1 pacid=42765349 polypeptide=Potri.007G123700.1.p locus=Potri.007G123700 ID=Potri.007G123700.1.v4.1 annot-version=v4.1 MACEKRKILIFGGTGYLGLHMIKASLSMGHPTYAYVRPVKPYTNPSKLDLLKEFESMGVTVFQGELEEHEKLVSAVKQVDVVISTLAVPQHLDQLKIISA MKEAGNIKRFVPSEFGNEVDRVSGLPPFETVLDNKRKIRRASEAAGLSYTYVSANSFAAYFVDYLLHPHEKREEVLVYGSGEAKAVLNYEEDVAAYTVKA ATDPRVANRVIIYRPPGNIVSQLGLISSWEKKTGRTLKKIHVPEEEIVKLSESLPFPENVPPSILHNIFIKGEQVSFELTADDLEASELYPDYKYTSVDS LLDICLVNPPKPKLAAFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75280			NmrA-like negative transcripti...		Potri.007G123700 [exp]	0	1	PCBERp2
AT1G21550			Calcium-binding EF-hand family...		Potri.005G183300 [exp]	3.16	0.9490
					Potri.012G124666 [exp]	3.46	0.9479
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024404 [exp]	8.48	0.9233
AT4G37290			unknown protein		Potri.005G142900 [exp]	10.09	0.9267
AT4G34131		UGT73B3	UDP-glucosyl transferase 73B3 ...		Potri.009G098966 [exp]	15.16	0.9231
					Potri.019G017304 [exp]	16.24	0.9174
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Potri.019G007227 [exp]	17.29	0.9060
					Potri.008G019250 [exp]	19.59	0.9065
AT4G39640		GGT1	gamma-glutamyl transpeptidase ...		Potri.005G082800 [exp]	21.07	0.8215
AT3G53150		UGT73D1	UDP-glucosyl transferase 73D1 ...		Potri.006G120600 [exp]	21.21	0.8996	GT4.2

Compare expression of checked genes

Potri.007G123700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.