Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43210 330 / 7e-108 Ubiquitin-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G036600 [exp] 620 / 0 AT2G43210 369 / 5e-122 Ubiquitin-like superfamily protein (.1.2) Potri.014G075600 [exp] 47 / 3e-05 AT4G00752 273 / 8e-87 UBX domain-containing protein (.1) Potri.003G122300 [exp] 46 / 6e-05 AT4G11740 409 / 1e-136 Ubiquitin-like superfamily protein (.1) Potri.001G109500 [exp] 46 / 6e-05 AT4G11740 429 / 2e-144 Ubiquitin-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026718 [exp] 345 / 8e-114 AT2G43210 341 / 8e-112 Ubiquitin-like superfamily protein (.1.2) Lus10025504 [exp] 343 / 5e-113 AT2G43210 355 / 1e-117 Ubiquitin-like superfamily protein (.1.2) Lus10026717 [exp] 342 / 1e-112 AT2G43210 338 / 8e-111 Ubiquitin-like superfamily protein (.1.2) Lus10041365 [exp] 50 / 3e-06 AT4G11740 241 / 4e-74 Ubiquitin-like superfamily protein (.1) Lus10036564 [exp] 49 / 6e-06 AT4G00752 250 / 8e-78 UBX domain-containing protein (.1) Lus10029591 [exp] 47 / 4e-05 AT4G11740 449 / 9e-153 Ubiquitin-like superfamily protein (.1) Lus10006321 [exp] 46 / 5e-05 AT4G11740 433 / 7e-146 Ubiquitin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00789 [poplar] [flax] UBX UBX domain
Representative CDS sequence Show only first row Show all	>Potri.007G123800.4 pacid=42765920 polypeptide=Potri.007G123800.4.p locus=Potri.007G123800 ID=Potri.007G123800.4.v4.1 annot-version=v4.1 ATGAAGGGTTCAATTTCTTCATTTACATATAAAGGTTCAATAGCGGAGGCAATTCTTGAATCCAAAAAACAAAAGAAACTTTTTGTTGTTTACATTTCAG GTGAAAATGTGGCATCGGCTGAATTGGAAAAATCCACTTGGACTGATTCTAAAGTGGCAGAGTCGCTCTCAAAGTACTGCATTTTATTGCATATCCCAGA AGGAAGCACTGATGCTTTGAATTTTTCTGCAATATACCAACAGAAATCTGCTCCTTGTATAACAGCTATTGGCTACAATGGGGTTCAACTTTGGCAAAGT GAAGGGTTTGTTACTGCTGAAGTTTTGGCTTCTGGTTTAGAGAAAGTGTGGCTGACCCTTCATATCCAGGAAACAACAGCAACTGTCCTGACTACAGCAC TTGCTTCGAAGAAACCTGAACCACTTTCTGGGTCTTCTGATATTGGTTCCTCTGGGCAAGGAAGTTCTTCAGGTACAGTCGTGCCGGTGCCTTTGAAAGA CAGGCATATCCAACCTTCAGAGGTTGGAACACAGGCTGCTGCTTCGGAGGTGATAGAAGAAAACAAAAGTCATGAACCAACTGCTGAGAAAACAATAACC AATTTGGGTGACAAGACATCTTCAAAATCATTTAATGTTCAGAAGTCGCAGACTGTTGGGGATGAGCGGTCCACTTGTCCCACTGAAGAAGACAAGAAAT CACCCAGTTCTTCGGTAACCAGCACAGACAATATCATAGCTGATCATACATCTTCTGCTGCTGAAGATGGACTTCTTGCCCAAGAAAAGAGTGTTAGTAA TCATACAGGTGTTCCCACAGGAGGCTCAGAATTAAGTACTACTGAGATAAAAGAAGTAGGAGATAAAAAGGCTGAATCCATGGATGATATGGTGCCCGGG ACATTGAATAATAATAAAAAAGTTAATGTATCAAGTGATGTTCATTTAAATATCCGTCTGCCTGATGGTGTTAGCTTACAGGAGAAGTTTTCTGTGACAA GCACTTTGAGAACGGTTAAAGATTATGTGGACAGAAACCAAGCAAGTGGCATTGGTGCATATGATCTTGCCATTCCTTATCCTCGCAAGACATTCAGCGA TCAAGATTTGAATAAATCATTATCAGAGTTGTCTCTACTTAATAGACAAGCATTGATAGTGGTTCCTCGTCAGCGAGCCACAAGTTACCACCAAAGAGGT TCTTTGTCAGACAGAGCAACTACTACAACTAGCAGTGGTTCAGTAAATGCAAATGACGGGGGATATTTTGCATATGTCAAAAGGATTCTATCCTACGTTA ATCCTCTCTCCTACTTTGGTGGTAGTGCAAACCCATCAAGTTCTGGACAAGCTCAATCTGCCATAGGAGAATATGGCCCAGATTCAACATCTCAGAATAA CACTCCAAGAATGGACAGACCAAAACTCTTCATCAACTGGCAGAAATGA
AA sequence Show only first row Show all	>Potri.007G123800.4 pacid=42765920 polypeptide=Potri.007G123800.4.p locus=Potri.007G123800 ID=Potri.007G123800.4.v4.1 annot-version=v4.1 MKGSISSFTYKGSIAEAILESKKQKKLFVVYISGENVASAELEKSTWTDSKVAESLSKYCILLHIPEGSTDALNFSAIYQQKSAPCITAIGYNGVQLWQS EGFVTAEVLASGLEKVWLTLHIQETTATVLTTALASKKPEPLSGSSDIGSSGQGSSSGTVVPVPLKDRHIQPSEVGTQAAASEVIEENKSHEPTAEKTIT NLGDKTSSKSFNVQKSQTVGDERSTCPTEEDKKSPSSSVTSTDNIIADHTSSAAEDGLLAQEKSVSNHTGVPTGGSELSTTEIKEVGDKKAESMDDMVPG TLNNNKKVNVSSDVHLNIRLPDGVSLQEKFSVTSTLRTVKDYVDRNQASGIGAYDLAIPYPRKTFSDQDLNKSLSELSLLNRQALIVVPRQRATSYHQRG SLSDRATTTTSSGSVNANDGGYFAYVKRILSYVNPLSYFGGSANPSSSGQAQSAIGEYGPDSTSQNNTPRMDRPKLFINWQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43210			Ubiquitin-like superfamily pro...		Potri.007G123800 [exp]	0	1
AT4G38360		LAZ1	LAZARUS 1, Protein of unknown ...		Potri.009G165600 [exp]	3.16	0.7602
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Potri.014G018000 [exp]	3.46	0.7521
AT5G55000		FIP2	potassium channel tetramerisat...		Potri.013G062500 [exp]	5.91	0.7151
AT2G20210			RNI-like superfamily protein (...		Potri.014G194800 [exp]	6.00	0.7612
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.013G150100 [exp]	8.24	0.7493
AT4G27190			NB-ARC domain-containing disea...		Potri.018G145556 [exp]	14.42	0.6941
AT1G15215		SHH1, DTF1	SAWADEE homeodomain homolog 1,...		Potri.018G046200 [exp]	16.49	0.6770
AT5G15270			RNA-binding KH domain-containi...		Potri.017G085500 [exp]	19.18	0.6327
AT2G43210			Ubiquitin-like superfamily pro...		Potri.017G036600 [exp]	21.84	0.6937
AT2G14680		MEE13	maternal effect embryo arrest ...		Potri.001G292800 [exp]	22.97	0.6633

Compare expression of checked genes

Potri.007G123800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.