Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18110 1973 / 0 EMB1270 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G02860 265 / 5e-74 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G31850 258 / 2e-70 PGR3 proton gradient regulation 3 (.1) AT5G55840 228 / 2e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G18940 215 / 1e-57 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74850 214 / 4e-57 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT2G31400 207 / 1e-54 GUN1 genomes uncoupled 1 (.1) AT3G06920 199 / 4e-52 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48730 183 / 4e-49 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 182 / 5e-48 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G036400 [exp] 2662 / 0 AT3G18110 1949 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 264 / 4e-72 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.009G092100 [exp] 252 / 1e-69 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G297300 [exp] 249 / 6e-69 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G043101 [exp] 227 / 2e-60 AT5G14770 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 225 / 5e-60 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G014100 [exp] 207 / 9e-55 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G069100 [exp] 202 / 3e-53 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.016G025600 [exp] 196 / 3e-52 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039149 [exp] 1045 / 0 AT3G18110 976 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039148 [exp] 756 / 0 AT3G18110 688 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013785 [exp] 347 / 2e-108 AT3G18110 296 / 3e-91 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 271 / 2e-76 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013894 [exp] 273 / 4e-76 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 255 / 2e-69 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10026206 [exp] 220 / 4e-58 AT5G14770 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043417 [exp] 203 / 3e-53 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033127 [exp] 198 / 8e-52 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10020002 [exp] 197 / 2e-51 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.007G123900.1 pacid=42765770 polypeptide=Potri.007G123900.1.p locus=Potri.007G123900 ID=Potri.007G123900.1.v4.1 annot-version=v4.1 ATGAGTGGAAGCATGGAGTGCAGTGGAGTGCTGGCTTTTCTACCATCAACACCTTCAAAGGTATGCAAAAGCACCTCTCTTTCTTGCTCTTTGCATCAAT CTGCACCCTCTACTGCCACTACTGAACTTAAAAACAACAGTACTGATTGTAGTGATAATGCTCCACAAAAATTTAGTTATAGCAGAGCTTCACCGTCAGT CAGATGGCCTCAACTTAAACTGAATGAAACCTATCATTCTTCTCCACAAACCCAATTCACTGAAATGTCTAAAGATGGAATCTTGAATCATTCATCACTT GATCAATTGACTGAAATGTCTAAAGATGAAATCTTGGATGTGGGCTCTTTCGAACTGAGTGATGATGATGATGATGATGGGAGTCAAGAAGAAAAGTTGA GGTGGAGGAAAAGTAGGACTAGAGTTAAGAAAATGAATAAATTAGCACTTAAGAGGGCTAAAGACTGGAGGGAGAGGGTGAAATATTTGACTGATAGGAT TTTAGGATTGACACAAGACCAGTTTGTGGCTGATGTTCTTGATGATAGGAAAGTGCAGATGACACCAACTGATCTTTGTTTTGTGGTTAAGTCTGTGGGC CAAGAAAGCTGGCACCGGGCGTTGGAGGTCTATGAGTGGTTGAATTTGCGCCATTGGTATTCCCCCAATGCGCGGATGCTATCCACAATTTTGTCTGTTC TGGGAAAGGCCAATCAAGAGGCATTGGCCGTGGAAGTATTTATGAGGGCTGAACCTTCAGCTGGGAATACTGTGCAAGTTTATAATGCCATGATGGGTGT ATATGCGCGGCGTGGTAGGTTTAATAAGGTCCAAGAACTACTTGATTTGATGCGTGAAAGAGGGTGCAAGCCAGACCTTGTAAGTTTCAATACATTGATA AATGCTCGATTGAAAGCTGGTGCAATGATGCCTAATTTGGCTATTGAGCTCTTAAATGAAGTGAGAAGATCTGGGCTTAGACCAGATACAATTACTTATA ATACTCTTATCAGCGCTTGTTCACGGGCATCGAATTTGGAGGAGGCTGCTAAGGTTTTTGATGATATGGAGGCACATCATTGCCAACCTGATCTTTGGAC TTACAATGCCATGATTTCAGTTTATGGAAGATGTGGACTGTCTGGCAAAGCGGAGCAGCTTTTTAATGACTTGGAGTCAAGAGGGTTTTTTCCAGATGCT GTGAGTTATAACTCATTGTTGTATGCTTTTGCAAGAGAAGGGAATGTGGAGAAAGTGAAAGAGATTTGGGAGGAAATGGTGAAAATAGGGTTTGGCAAAG ATGAGATGACGTATAACACTATGATCCACATGTATGGGAAGCAAGGTCAGAATGAACTAGCACTACAACTTTACAGGGACATGCAGTCATCAGGCAGGAA TCCTGATGCAGTTACATATACTGTTTTAATTGATTCGTTGGGGAAGACAAACAAAATAGCGGAGGCTGCAGGTGTGATGTCAGAGATGCTGAACACTGGA GTTAAACCTACCTTGAAGACATACAGTGCTTTGATTTGTGGGTACGCCAAGGCTGGGAAACCAGTGGAGGCTGAAGAGACTTTCGATTGCATGCTCAGGT CTGGAATTAGACCTGACCATCTAGCATACTCGGTTATGCTGGACATCCATCTAAGATTTAATGAGCCAAAGAGGGCAATGACTTTGTACAAGGAAATGCT TCATGATGGTATCACACTGGATCATTCCCTTTATGAGTTGATGCTACGAACTCTTAGGAAGGTAAACAAAGTGGAAGATATTGGAAGAGTTATCAGAGAT ATGGAAGAAATATGTGGCATGAACACACAAACTATTTCTTCTATTCTTGTCAAGGGTGAATGCTATGATGAAGCTGCAAAAATGCTGAGACGGGCAATCA GCGATCACTTTGAAATAGACCGTGAGAATTTGTTGTCTATTTTGAGTTCATATAGTTCATCTGGGAGGCACGCTGAGGCACTTGACTTGCTTGAATTCTT GAAAGAACATTCTCCCAGGTCCAGTCAAATGATTACTGAAGCTTTGGTTGTTATGCTTTGCAAGGCTCAGCAGTTGGATGCTGCTTTAAAGGAATACAGT AATAATAGAGAACTTGGTTTTACTGGGAGTTTTACCATGTTTGAATCCTTGATTCAATGCTGTTTAGAAAATGAACTCATTACTGAAGCTTCTCAGGTTT TTTCTGACATGAGGTTCTGTGGCATCAAAGCATCTGAATCTCTCTATGAAAGCATGGTGCTTTTGTATTGTAAAATGGGGTTCCCTGAAACAGCCCATCA TCTAATTGATTTTGCAGAATCAGATGGCATATTATTGAATAATATATCCCTTTATGTCAATGTGATTGAGGCATATGGAAGATTGAAGCTATGGCAGAAA GCAGAGAGTGTAGCGGGGAATTTGAGACAAAGGTGCATCACTGTGGACCGTAAAGTCTGGAATGCTTTAATTGAAGCTTATGCTGCAAGTGGCTGTTATG AGCGAGCCAGGGCTATTTTTAATACGATGATGAGAGATGGCCCTTCTCCAACTGTAGATACCATTAATGGTCTCTTGCAGGCTCTGATTGTTGATGGAAG ATTGGATGAGCTTTACGTGGTAGTTCAGGAGTTGCAGGATATGGGTTTTAAAATAAGCAAAAGTTCTATTCTTTTAATGCTCGATGCATTTGCAAGGGCT GGGAACATATTTGAAGTGAAGAAAATATACCATGGAATGAAGGCTGCGGGTTATTTTCCTACCATGCATCTTTACAGGGTAATGGCTCGGCTGTTAAGCA GGGGAAAACAGGTAAGGGATGTTGAAGCCATGCTTTCTGAGATGGAAGAAGCAGGATTCAAGCCTGATCTTTCTATATGGAATTCTGTGCTCAAGATGTA TGTGGCAATTGAAGATTTTAGGAAGACAATTCAAGTTTACCAAAGGATCAAGGAGGATGGGCTGGAGCCAGATGAGGACACTTACAACACATTAATTGTG ATGTATTGCAGAGATCATAGACCAGAGGAAGGTTTCTCACTGATGCATGAAATGAGAGTGGCAGGATTGGAGCCTAAATTGGATACCTACAAAAGCTTGG TTGCATCATTTGGCAAGCAGCAGTTGGTGGAGCAAGCAGAGGAGCTTTTCGAGGAGTTACAGTCAAAGGGATGTAAACTAGATCGCTCCTTTTATCATAC AATGATGAAAATATATAGAAATTCTGGAAGTCATTCTAAAGCTGAAAGACTGTTTAGCATGATGAAAGATGCAGGAGTGGAACCCACTATTGCCACAATG CATTTGCTTATGGTCTCCTATGGCAGCTCTGGACAGCCTCAGGAGGCTGAAAAGGTTCTTTCTAATTTGAAAGAAACAGGTTCAAATCTCAGTACGCTAC CCTATAGTTCTGTTATTGATGCTTATCTCAGAAATGGAGATTACAACATCGGAATTCAGAAATTGATACAGATGAAGAAAGAGGGTCTGGAACCAGATCA CAGAATATGGACATGCTTTATTAGGGCTGCAAGTTTGTCCCGGCGCACAAGTGAGGCCATTGTCCTTCTAAATGCTCTCCAAGATGCTGGATTTGATCTT CCAATCAGGCTTCTAACAGAAAAACCTGAATCATTAGTTTCAGCACTGGACCGGTGCCTTGAGATGCTAGAAACCCTGGAAGACAATGCTGCCTTTAACT TTGTCAATGCATTAGAAGATTTGTTGTGGGCATTTGAACTTCGAGCCACTGCTTCATGGGTTTTTCAGTTGGCCATCAAGAAGAGAATATATCGTCATGA TGTGTTCAGGGTAGCTGACAAGAACTGGGGAGCTGATTTTAGAAAGCTGTCAGGTGGCGCAGCTCTTGTTGGTCTTACTTTATGGCTTGACCACATGCAG GACGCATCCTTGCAGGGATGTCCAGAATCTCCAAAATCAGTTGTTCTGATAACTGGGACAGCTGAATACAACATGGTGTCCCTTGACAGCACACTGAAGG CGTGCCTTTGGGAGATGGGTTCCCCATTTCTTCCTTGTAAAAGTCGGAGTGGGCTCCTTATAGCCAAGGCCCACTCCCTCAGGATGTGGTTAAAGGACTC TCCTTTCTGCCTGGACCTCGAGTTAAAAAATGCCCCATCTCTCCCGGAATCAAACTCAATGCAGCTAATAGAAGGATGCTTCATAAGGAGCGGTCTTGTT CCTGCATTTAAGGAGATAAATGAGAAGGTTGGGTTTGTGAGACCAAAGAAATTTGCTAAGTTTGCTTTACTATCAGATGACAGAAGAGAAAAGGCCATTC AAGCATTTATAGAGGGTGGGAAAGAAAAGAAGGAAAAGATGAAGAAGAGGGGAGAGCTTGGTAAGAAAAGGAATATCAAGGTCATGCTCAGAAAAAGGAA GTTTACTCGGCAAGCCATGCCATCAAACAGGGGGAGAATAGCATAG
AA sequence Show only first row Show all	>Potri.007G123900.1 pacid=42765770 polypeptide=Potri.007G123900.1.p locus=Potri.007G123900 ID=Potri.007G123900.1.v4.1 annot-version=v4.1 MSGSMECSGVLAFLPSTPSKVCKSTSLSCSLHQSAPSTATTELKNNSTDCSDNAPQKFSYSRASPSVRWPQLKLNETYHSSPQTQFTEMSKDGILNHSSL DQLTEMSKDEILDVGSFELSDDDDDDGSQEEKLRWRKSRTRVKKMNKLALKRAKDWRERVKYLTDRILGLTQDQFVADVLDDRKVQMTPTDLCFVVKSVG QESWHRALEVYEWLNLRHWYSPNARMLSTILSVLGKANQEALAVEVFMRAEPSAGNTVQVYNAMMGVYARRGRFNKVQELLDLMRERGCKPDLVSFNTLI NARLKAGAMMPNLAIELLNEVRRSGLRPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDA VSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTG VKPTLKTYSALICGYAKAGKPVEAEETFDCMLRSGIRPDHLAYSVMLDIHLRFNEPKRAMTLYKEMLHDGITLDHSLYELMLRTLRKVNKVEDIGRVIRD MEEICGMNTQTISSILVKGECYDEAAKMLRRAISDHFEIDRENLLSILSSYSSSGRHAEALDLLEFLKEHSPRSSQMITEALVVMLCKAQQLDAALKEYS NNRELGFTGSFTMFESLIQCCLENELITEASQVFSDMRFCGIKASESLYESMVLLYCKMGFPETAHHLIDFAESDGILLNNISLYVNVIEAYGRLKLWQK AESVAGNLRQRCITVDRKVWNALIEAYAASGCYERARAIFNTMMRDGPSPTVDTINGLLQALIVDGRLDELYVVVQELQDMGFKISKSSILLMLDAFARA GNIFEVKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIV MYCRDHRPEEGFSLMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKIYRNSGSHSKAERLFSMMKDAGVEPTIATM HLLMVSYGSSGQPQEAEKVLSNLKETGSNLSTLPYSSVIDAYLRNGDYNIGIQKLIQMKKEGLEPDHRIWTCFIRAASLSRRTSEAIVLLNALQDAGFDL PIRLLTEKPESLVSALDRCLEMLETLEDNAAFNFVNALEDLLWAFELRATASWVFQLAIKKRIYRHDVFRVADKNWGADFRKLSGGAALVGLTLWLDHMQ DASLQGCPESPKSVVLITGTAEYNMVSLDSTLKACLWEMGSPFLPCKSRSGLLIAKAHSLRMWLKDSPFCLDLELKNAPSLPESNSMQLIEGCFIRSGLV PAFKEINEKVGFVRPKKFAKFALLSDDRREKAIQAFIEGGKEKKEKMKKRGELGKKRNIKVMLRKRKFTRQAMPSNRGRIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Potri.007G123900 [exp]	0	1
AT5G54090			DNA mismatch repair protein Mu...		Potri.012G005000 [exp]	2.00	0.9693
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Potri.018G103300 [exp]	3.00	0.9514
AT5G13730		SIGD, SIG4	sigma factor 4 (.1)		Potri.009G057200 [exp]	4.47	0.9475
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Potri.004G166600 [exp]	5.29	0.9398
AT1G01320			Tetratricopeptide repeat (TPR)...		Potri.002G170900 [exp]	6.00	0.9484
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Potri.014G170300 [exp]	9.21	0.9255
AT2G38330			MATE efflux family protein (.1...		Potri.016G126000 [exp]	11.00	0.9341
AT1G75430	HD	BLH11	BEL1-like homeodomain 11 (.1)		Potri.005G232000 [exp]	11.83	0.9246
AT5G17860		CAX7	calcium exchanger 7 (.1)		Potri.013G065800 [exp]	12.48	0.9099
AT1G01320			Tetratricopeptide repeat (TPR)...		Potri.014G098600 [exp]	12.64	0.9393

Compare expression of checked genes

Potri.007G123900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.