Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43230 582 / 0 Protein kinase superfamily protein (.1.2) AT3G59350 579 / 0 Protein kinase superfamily protein (.1.2.3) AT1G06700 553 / 0 Protein kinase superfamily protein (.1.2) AT2G30740 548 / 0 Protein kinase superfamily protein (.1) AT2G30730 475 / 3e-169 Protein kinase superfamily protein (.1) AT2G47060 462 / 2e-163 PTI1-4 Pto-interacting 1-4, Protein kinase superfamily protein (.1.2.3.4.5) AT3G17410 452 / 1e-159 Protein kinase superfamily protein (.1) AT2G41970 450 / 1e-158 Protein kinase superfamily protein (.1) AT3G62220 444 / 1e-156 Protein kinase superfamily protein (.1) AT1G48210 440 / 5e-155 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G036300 [exp] 644 / 0 AT3G59350 632 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.002G188600 [exp] 464 / 1e-164 AT3G62220 595 / 0.0 Protein kinase superfamily protein (.1) Potri.014G114200 [exp] 461 / 3e-163 AT3G62220 577 / 0.0 Protein kinase superfamily protein (.1) Potri.016G059600 [exp] 460 / 6e-163 AT2G41970 600 / 0.0 Protein kinase superfamily protein (.1) Potri.006G194000 [exp] 459 / 3e-162 AT2G41970 586 / 0.0 Protein kinase superfamily protein (.1) Potri.010G001500 [exp] 419 / 8e-147 AT1G48210 494 / 3e-176 Protein kinase superfamily protein (.1.2) Potri.014G119100 [exp] 279 / 2e-87 AT4G02010 993 / 0.0 Protein kinase superfamily protein (.1) Potri.002G194700 [exp] 276 / 3e-86 AT4G02010 958 / 0.0 Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 262 / 9e-84 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026706 [exp] 620 / 0 AT3G59350 613 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10025496 [exp] 617 / 0 AT3G59350 610 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10025498 [exp] 616 / 0 AT3G59350 630 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10026708 [exp] 612 / 0 AT3G59350 625 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10009983 [exp] 471 / 6e-167 AT3G62220 586 / 0.0 Protein kinase superfamily protein (.1) Lus10038042 [exp] 469 / 1e-166 AT3G62220 588 / 0.0 Protein kinase superfamily protein (.1) Lus10010072 [exp] 469 / 2e-166 AT3G62220 592 / 0.0 Protein kinase superfamily protein (.1) Lus10004524 [exp] 466 / 2e-165 AT3G62220 591 / 0.0 Protein kinase superfamily protein (.1) Lus10016247 [exp] 457 / 8e-162 AT2G41970 563 / 0.0 Protein kinase superfamily protein (.1) Lus10029295 [exp] 457 / 8e-162 AT2G41970 562 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.007G124000.1 pacid=42765355 polypeptide=Potri.007G124000.1.p locus=Potri.007G124000 ID=Potri.007G124000.1.v4.1 annot-version=v4.1 ATGCGTCGGTGGCTCTGCTGTACCTGTCAGGTAGAGGAGTCTTACCAAGAACATGAGAATGAGCGCATCAGAAGCACGGGGAACTTTGGTGATGGGTATC CTAAAGGCTCAAAAGTATCAGCTCCTGCCAAAGCAGAAGTACAGAAGGAAGCACCACCTGTTGAAGTGCCCGTGTTGTCTTTGGAAGAACTGAAAGAAAA GACAGATAATTTCGGGTCAAAGGCATTGATTGGTGAAGGTTCCTATGGAAGAGTTTATTATGCAAACTTAGAAAATGGAAAAGCTGTGGCCATAAAGAAA CTTGATGTTGCAAGCGAGCCAGAGACAAATGTTGAATTTTTGACCCAGGTTTCCATGGTGTCAAGATTGAAACATGAAAATTTTGTGGAGTTACTCGGTT ACTGTGTAGAAGGAAATCTTCGAGTGCTTGCATATGAGTTCGCAACAATGGGATCCCTCCATGACATATTGCATGGTAGGAAGGGAGTTCAAGGTGCACA GCCAGGACCAGTTCTTGATTGGATGCAGCGAGTGAGAATTGCTGTCGATGCAGCAAGGGGAATGGAATACTTGCATGAGAAGGTACAACCTGCTGTAATA CACAGAGATGTCAGATCAAGCAATGTGCTTCTGTTTGAAGACTTCAAAGCCAAGATCGCAGATTTTAACCTTTCAAATCAGGCTCCTGACATGGCTGCTC GCCTTCATTCAACTCGAGTTTTAGGAACCTTTGGTTATCATGCTCCTGAGTATGCAATGACTGGACAATTGACACAGAAGAGTGATGTTTACAGTTTTGG AGTAGTTCTCCTAGAGCTTCTTACTGGGAGGAAACCTGTTGATCATACCATGCCACGCGGACAGCAGAGTCTTGTTACATGGGCTACACCAAGACTGAGT GAAGACAAAGTTAAACAATGTGTAGATCCAAAGCTGAAAGGAGAATATCCCCCTAAAGGAGTTGCCAAGCTGGCAGCTGTGGCAGCGTTATGTGTGCAGT ATGAAGCTGAGTTCCGGCCAAATATGAGCATTGTTGTCAAGGCTCTCCAACCACTTCTGAAGGCTGTCGCTGTCGCTGTCGCTCCTGCTCCTGCTCCAGA GACCTAA
AA sequence Show only first row Show all	>Potri.007G124000.1 pacid=42765355 polypeptide=Potri.007G124000.1.p locus=Potri.007G124000 ID=Potri.007G124000.1.v4.1 annot-version=v4.1 MRRWLCCTCQVEESYQEHENERIRSTGNFGDGYPKGSKVSAPAKAEVQKEAPPVEVPVLSLEELKEKTDNFGSKALIGEGSYGRVYYANLENGKAVAIKK LDVASEPETNVEFLTQVSMVSRLKHENFVELLGYCVEGNLRVLAYEFATMGSLHDILHGRKGVQGAQPGPVLDWMQRVRIAVDAARGMEYLHEKVQPAVI HRDVRSSNVLLFEDFKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLS EDKVKQCVDPKLKGEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALQPLLKAVAVAVAPAPAPET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43230			Protein kinase superfamily pro...		Potri.007G124000 [exp]	0	1
AT4G05320		UBQ10	polyubiquitin 10 (.1.2.3.4.5.6...		Potri.007G123300 [exp]	3.46	0.7263
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Potri.003G071700 [exp]	3.46	0.7036	ERF39,ERF1.4
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Potri.010G117900 [exp]	7.07	0.6750
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Potri.001G163700 [exp]	10.48	0.6745	Pt-ERF1.3
AT4G30520		SARK	SENESCENCE-ASSOCIATED RECEPTOR...		Potri.018G101300 [exp]	10.95	0.7300
AT4G17260			Lactate/malate dehydrogenase f...		Potri.001G122400 [exp]	15.29	0.6412
AT4G31080			Protein of unknown function (D...		Potri.006G281400 [exp]	20.19	0.6582
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.015G113466 [exp]	22.97	0.7073
AT4G14103			F-box/RNI-like superfamily pro...		Potri.001G395000 [exp]	31.30	0.7027
AT3G59350			Protein kinase superfamily pro...		Potri.017G036300 [exp]	31.74	0.6105

Compare expression of checked genes

Potri.007G124000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.