Plant FIBer expression Database

Potri.007G124150 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G54380 253 / 1e-75 spliceosome protein-related (.1)
AT2G42510 131 / 1e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G036200
[exp]
997 / 0 AT1G54380 264 / 2e-79 spliceosome protein-related (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022813
[exp]
196 / 8e-56 AT1G54380 283 / 2e-91 spliceosome protein-related (.1)
Lus10011880
[exp]
175 / 3e-48 AT1G54380 281 / 3e-90 spliceosome protein-related (.1)
Lus10026705
[exp]
65 / 6e-11 ND 45 / 5e-05
Lus10025495
[exp]
62 / 5e-10 AT1G54380 50 / 1e-06 spliceosome protein-related (.1)
Lus10023803
[exp]
50 / 9e-08 ND 34 / 0.003
PFAM info
Representative CDS sequence
>Potri.007G124150.2 pacid=42766472 polypeptide=Potri.007G124150.2.p locus=Potri.007G124150 ID=Potri.007G124150.2.v4.1 annot-version=v4.1
ATGGCTGATGATACATCAGTTGGTTCCAAAAGAAGAATCACAGAGATTGAAGAAGAATCTCTCCTTCAACAACAACAAAAAGACCACTCTTGTTCTTTTT
TCTCTACATTCTCTCCTCAAGGAGACTCAATTCTTTCACCTACAAAAGCAGTCCAAGAAGAAGCCAATCATCAAGACAATCCAAGCCCAACGTCTTTCAA
GAAGGTAAAGAGCTCTTGTTTAACTGAATCTGATACTAGTTTCCGAGAGAAACAAGGAGTGGGTTTTGAAGAAAATGGAGTAAAGTTTGATTTTTTGAAT
GAAAAGAATGTTGCTTTTTGTGGACTGGTTCCTGGGTCTTCTGAAAGTGGAGAGTTGGATGAAAAGATTGAGAGTTCTGGTGCGAAAGTGAAAGAAACTG
AGAATTCTGTGGATGGTGGATTAAAGAAAGGAGAGGTTGAATGGAGTGTTGATGATGCGAAAGAAGTGAAAGAGAAGGGGAAAGATTTTGTGGGAAGTGA
ATGTTTTGAGGCTGAGATGGGCTTGGGTACTGATGATAATAAAGAGTCTGTGAAGGTGAAAGAAAGTGGAGGAGAAAGTTTATTGGAAGCAAAGAAGCAG
TTACTGGAAGAACTTGAAGTTGGTTCAATCTTTAAGAACAAAACCAGTGTGGATAACAATGTTGATGATTTTGATACTAATGTGGGAGTCTCGGGAAGTC
TCAAAGGATTTGGTGAATCTGTTAGACGTTCTTTGAAGTTTGAATTGATTGATGATACAGTGTTGATTGAACCAGTTTCAGAGACCGAAACTGCTAATGG
TGGTGCTAATGTTGCTGAGAGGAATGGAAAGAAGAATGGGAAACAGGGAACTGATGGAAAGAAGGAGAAAAGGCCACGGAGAAGGGGAAAGGTTGCAACA
AGGGGTTTGGAGACGAGTGAAGGGCAAAAGAAAGTGACCCAAGTTGGTGAAGCTCAAAATAGAACAATCCATGTTGGTGAAATTCGAGATAGATGTGCAA
CAGATGGGGATCAGATGAAGAGGAAGTACTCGAGGGTGGAAATGGAGGCCCTGAGGTTTGCAAATATTGTAGAACAGAGAAAATTATGGAGAGATGTATA
CACTGGACTTGGATATGATGTCGTGGAGGGGTATAAAGACTTGGCAAGTTCAAAGCATCAGAAGAACGTTTGCTTGAACTTCAATCCCCTGGAGCCTTTC
GGAAGGAAGGAACCTGACATTCTTGGGGAAGAATCATCTGAAAATGTGGATGATGGATTAGAAAACATGGAAGGAGATGGGGTGCAAAATGTGGATCTAT
TGAATCCTGCTTGCAGTAGCAGTATTGAGGGTGAAGGTGCTGCTACACTTTTGGTGGAAGAGTATGATGAAGAAGATGACAGTGACGATGATTATGCTAG
CATACAGAGACCTGCTTTCGCTGTAGAAGGAGAACCAGATTTTGATTCTGGACCTCCAGAGGACGGATTAGAATACCTCAGGCGTGTCAGGTGGGAGGCT
GCTCACATTCCGAAAGTTAAAGTAGCCAAGCTTGATAGGAGTAGAGTTAACAAAGAACAAACTGTTTATATGCCCCAGATTCCTGACATTGCCAAGTGCC
CAGAATATTTACTCCCGTCAAGGCAGTGGGAGGATGTGTTTCTTGCTGATTTTTCAGAGCTGCGATTGTTATTCTCTCAAAATGACGGTCCCAGCACTAA
AATTTCCCATAAGATGCAACCAGCAGCTATTGTTCATGGGAGTTGTTCCCCTCAGCTTTCTGAAAGCGTTATTGTCGAAAAATTCAATAACCTTAGAACT
GATGAAGTCCAATCCTATAAACAGCCCGACACTTCCAGCTCTGAGAGCATCATTGATCAGCTATGCATGGAGAATCGTGAAGATCGTAGAAGCTTAACAC
CTTCCCAGCATCAAACTCCTGAAGCTTCGTCGAGTGATGCTTTATGCAACTACCCTACCTTACCGGTCATTTTAGCTATGGATAGTGTTGCTCGAGTTTC
CATGCTGAGGCGGTGCATAAAATTGGCAGAAACTACAGACGCATTGTCCAAGAATGATTGTGTGTGGCTGTTTGCCTTATGTGCAGCAGTTGATGCTCCA
TTAGATGCTGGCACGTGTGCTGCTCTTCGTGGTCTCCTCCGGAAATGCGCTAGCTTGCGAGCTGGCAAATCTGAACTTGATGATGAGGTTATCATGCTGA
ATATTCTTGCCACAATTTCAGGCAGGTATTTCGGTCAGTCTGAAAGCTGA
AA sequence
>Potri.007G124150.2 pacid=42766472 polypeptide=Potri.007G124150.2.p locus=Potri.007G124150 ID=Potri.007G124150.2.v4.1 annot-version=v4.1
MADDTSVGSKRRITEIEEESLLQQQQKDHSCSFFSTFSPQGDSILSPTKAVQEEANHQDNPSPTSFKKVKSSCLTESDTSFREKQGVGFEENGVKFDFLN
EKNVAFCGLVPGSSESGELDEKIESSGAKVKETENSVDGGLKKGEVEWSVDDAKEVKEKGKDFVGSECFEAEMGLGTDDNKESVKVKESGGESLLEAKKQ
LLEELEVGSIFKNKTSVDNNVDDFDTNVGVSGSLKGFGESVRRSLKFELIDDTVLIEPVSETETANGGANVAERNGKKNGKQGTDGKKEKRPRRRGKVAT
RGLETSEGQKKVTQVGEAQNRTIHVGEIRDRCATDGDQMKRKYSRVEMEALRFANIVEQRKLWRDVYTGLGYDVVEGYKDLASSKHQKNVCLNFNPLEPF
GRKEPDILGEESSENVDDGLENMEGDGVQNVDLLNPACSSSIEGEGAATLLVEEYDEEDDSDDDYASIQRPAFAVEGEPDFDSGPPEDGLEYLRRVRWEA
AHIPKVKVAKLDRSRVNKEQTVYMPQIPDIAKCPEYLLPSRQWEDVFLADFSELRLLFSQNDGPSTKISHKMQPAAIVHGSCSPQLSESVIVEKFNNLRT
DEVQSYKQPDTSSSESIIDQLCMENREDRRSLTPSQHQTPEASSSDALCNYPTLPVILAMDSVARVSMLRRCIKLAETTDALSKNDCVWLFALCAAVDAP
LDAGTCAALRGLLRKCASLRAGKSELDDEVIMLNILATISGRYFGQSES

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G54380 spliceosome protein-related (.... Potri.007G124150
[exp]
0 1
AT2G16880 Pentatricopeptide repeat (PPR)... Potri.008G044000
[exp]
1.00 0.9278
AT2G20710 Tetratricopeptide repeat (TPR)... Potri.016G063300
[exp]
2.00 0.9093
AT5G46920 Intron maturase, type II famil... Potri.001G147801
[exp]
4.00 0.9181
AT3G42170 BED zinc finger ;hAT family di... Potri.004G126740
[exp]
4.89 0.8938
AT3G18840 Tetratricopeptide repeat (TPR)... Potri.009G113500
[exp]
6.24 0.9099
AT4G21670 FRY2, FLP1, ATC... FIERY 2, C-terminal domain pho... Potri.011G049400
[exp]
6.70 0.9034
AT1G32330 HSF ATHSFA1D heat shock transcription facto... Potri.001G138900
[exp]
8.36 0.8928
AT3G62330 Zinc knuckle (CCHC-type) famil... Potri.014G118100
[exp]
8.94 0.8751
AT3G04980 DNAJ heat shock N-terminal dom... Potri.013G029500
[exp]
9.48 0.8932
AT2G31240 Tetratricopeptide repeat (TPR)... Potri.002G039801
[exp]
10.58 0.8423

Potri.007G124150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.