Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58210 111 / 1e-26 EMB1674 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) AT5G02520 66 / 1e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G036100 [exp] 366 / 7e-127 AT1G58210 127 / 6e-33 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Potri.004G077400 [exp] 97 / 5e-22 AT5G02520 121 / 4e-29 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004374 [exp] 120 / 9e-32 AT1G58210 112 / 6e-28 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Lus10025814 [exp] 78 / 2e-15 AT5G02520 100 / 1e-21 unknown protein Lus10040172 [exp] 40 / 0.0003 AT1G58210 49 / 5e-08 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09133 [poplar] [flax] SANTA SANTA (SANT Associated)
Representative CDS sequence Show only first row Show all	>Potri.007G124300.3 pacid=42766359 polypeptide=Potri.007G124300.3.p locus=Potri.007G124300 ID=Potri.007G124300.3.v4.1 annot-version=v4.1 ATGTCGACTGACCCGAAAAGGAAAGGCTCTAGCAGTGCCACTACCCCAGCTTCACTAACCAAAATCTTGCATCGTTCTCTGTCGCATCTTAAGTCAAGAA CGCCGAACAATATCACCCCTGTCTCTTCTTTATCTCTTAAATCGGTGTGGTTATATGATTGGTGGCTGGCTAAGGCAGAAGGGGATGGCTTAGCTGTTTC CGGGTTTACTTTTAGAGAAGGAGTAGGAGCAAGATTGTTTTGCTCGGCAGCGATTGTCAGAAGACATTACGCCACCATTCTTGAGTCAAAAGATGGCATC ACTGTTACAATTAGTGGATTCATAAATAGAGATCGAACTCGTGAAAATGGGTTTTCATTCCAGATTTGTGAGCATTTCCAACTGGGATTTCCATATTCTT GGTTAGAGCTTGCCACCCGATTGGGTGGTGAAGAGTCTGCTAACAGAGGCAGTCCTCCTGGAAAATCGGGTTTTGATGAGCCCAAAATGTCTTCTGGTAC CAGCGCAAGCGCCGCCTCCGTTTCTTTTGATGATCTCCCGGTGACAAGGATCCGCGATATTGCAACGCACCCTCTTGGAGATTCCAAAGATTGTGCACTC GCTGATATCCTTGATCATTTCTGCAGCAATGATGCCAAACTCTCTCCATTGGCAACCAGTCCAGGCTCAAAGAATCCAGTCACTGTGGCAAATGCTGTGC TGGATGAAACTCCAAGGAAAAACAAGAGGAGAGCTGACCGGAAGTACAAAGATGGAGGTATAATTCCACGTAGAGTTGATATAGTAACGGGGGAACACAT CACACCAAGCAGAGGAATTGTCACAAGAAGCATGTCCAGGCGGAGGAATTTTAGAGAAATACGAGAAGAAAGTCCCTCATCAAACCCTACTGTCTCCTGC AAAGCATCCAGAAACTACCCAGAAAAGGTTTTGCCATCATCTGCATTTCTTTCAACATCAGAGACCACTAAGAACCTTGCCGGTGGGACGATGAGTACAA GTGCTAGGAGAGATAGTTGGGCCACCACATCAACGGAGAAAATTATGGAAGTCCCTGATGTACCTTTAGTCAGAAGGTCAAGCAGTAGGCCGAATATCCG GAAGGATTATCGTGAAAAGTAA
AA sequence Show only first row Show all	>Potri.007G124300.3 pacid=42766359 polypeptide=Potri.007G124300.3.p locus=Potri.007G124300 ID=Potri.007G124300.3.v4.1 annot-version=v4.1 MSTDPKRKGSSSATTPASLTKILHRSLSHLKSRTPNNITPVSSLSLKSVWLYDWWLAKAEGDGLAVSGFTFREGVGARLFCSAAIVRRHYATILESKDGI TVTISGFINRDRTRENGFSFQICEHFQLGFPYSWLELATRLGGEESANRGSPPGKSGFDEPKMSSGTSASAASVSFDDLPVTRIRDIATHPLGDSKDCAL ADILDHFCSNDAKLSPLATSPGSKNPVTVANAVLDETPRKNKRRADRKYKDGGIIPRRVDIVTGEHITPSRGIVTRSMSRRRNFREIREESPSSNPTVSC KASRNYPEKVLPSSAFLSTSETTKNLAGGTMSTSARRDSWATTSTEKIMEVPDVPLVRRSSSRPNIRKDYREK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Potri.007G124300 [exp]	0	1
					Potri.004G013800 [exp]	4.00	0.9656
AT5G19610		GNL2	GNOM-like 2 (.1)		Potri.018G075300 [exp]	4.12	0.9656
AT2G28490			RmlC-like cupins superfamily p...		Potri.001G259208 [exp]	10.95	0.9717
AT3G51970		ATASAT1, ASAT1,...	ARABIDOPSIS THALIANA STEROL O-...		Potri.016G014600 [exp]	12.00	0.9513
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Potri.008G192700 [exp]	13.92	0.8996
AT1G22240		APUM8	pumilio 8 (.1)		Potri.001G457700 [exp]	14.49	0.9697
AT3G06600			unknown protein		Potri.010G147301 [exp]	15.09	0.9267
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Potri.011G069600 [exp]	17.66	0.9297
AT5G05800			unknown protein		Potri.001G391600 [exp]	18.43	0.9677
AT4G33925		SSN2	suppressor of sni1 2, unknown ...		Potri.009G091800 [exp]	21.72	0.8782

Compare expression of checked genes

Potri.007G124300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.