Plant FIBer expression Database

Potri.007G124700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G43250 662 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G035700
[exp]
1048 / 0 AT2G43250 726 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040469
[exp]
660 / 0 AT2G43250 598 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.007G124700.1 pacid=42766110 polypeptide=Potri.007G124700.1.p locus=Potri.007G124700 ID=Potri.007G124700.1.v4.1 annot-version=v4.1
ATGGCACTTGAATTTATCTATAGCCTACAAAATGTTTGGCCTTTGTCAATATTGAAAGCTGATGATTTGAAGGCATCTGACAGAATAGTTAGGAAGCTTT
CTATACCAGAAAACACGAAAAGTTTCGTTTTTGCAGTTCGAGATCCAAAATCTCAATCTGTGATTTATATACTTTGTGCTCAGAATTTATCTGAGAGGTC
AGCTGTCGATGTTGAGTGCCTTATAAGAGAGATTCGACCTGATGCTGTTGTGGCTCAGGTGGGTCATTCGCCATTGGTTCAAATTCAATCCGAAGAGAGT
GAATTGGGAAATATTGCTGATGATCTAGTTCCCACTTCGTCATTTGGAGTGATTAAAAGATGCTTTTTAAATAAGATTAACAAGGAAAAGTATGAAGATT
TGGCTGGAAGCTTGGTTTTGAGAGAAATATTTGGGACGGGTTTTCACGGGCATATCTTGGCTGCCAAGAAGGTGGCCGAGGAGGTAGGTTCATCTTTTTT
GGTGCTTGAAACTTCATCTATCAATACAGTTATTGGGGACAATTCTTCGAGTGAAGTTGACACTGGGAGTGAAGTTGACACAGGGAGCAGAGTTCATGCT
TTTGTTAGTAGTTTAGTGCCACAGAAAGCAGGTTCCATTTCTTTGCAAAGTTCGAGGAGGTTTAGTCTTGATGATAATGTTCAGTCACGGATGGTGAAGT
TGTCATCTTCTTATATGGATTTGTCAATGCGTAAGTTGCGTCCTTCAAGTTCTGTTTCAGAGTCAGGATTAAAAGAAATTCATCCAGGAAACAGTTTCCA
GGTGCCACCATTTGCCCAATCTGTGTATCCATTACTTCAAGATCTACATAATATATTCATTGATCTCCCGTCAATCGGTAGGGCTTTAGCCTTTGCACAG
AAAATGCTATATGATGTAAACAGGGGGGAAGCTGTGGATACCCGAATCATATCCGAAGTGTACACCTTCCGAGTTGCTGTTGAGGGTCTGAGAATTTCTC
TTAATAATGCCGGTCGATTTCCCATTAAAGAACTGGGGAAGCCCAACAAGACTAAGATTGAGTTTTCAGAGCTTCAGGTTCAGGACAAGTCACATGCACT
CATTGCACAGGCCCTTCAAAGCCAGACTAGGAAGTTCAAGACTATAGTAGCTGTAGTAGATGCTAGTGGCTTAGGAGGTATCAGGAAACATTGGAACACT
CCTGTGCCTCCAGAAGTGAGGGATTTGGTTGGGCAGCTTGTCACTGAGTGTGAAAGTGATGGAGAAGTTCCAAATCATGCTGAAAAGAGAAGGCTACTTT
CTAACAAATATTTGGTGGCAGTTGGAGCTGGGGCAACAGCAGTTTTTGGAGCTTCATCGCTTTCTAAAGTTGTTCCTGCGTCTACATTCGTGAAGGTCGT
TACATTTAAATTACCTACTTCCCTTAAACTTCTGCTGACCCAAACCCAAAAGATAACGGCAATATCTATGGGCAAGACTCTTGGTCCAACAAAACTGCTG
GCCCCTGGATTGGCCAATTCTGGAGCCAATGCAACATCTGCCTTGAAGGCAGCCACTTCTGCCGAGAAAATCCGGACAGTGGTCCACAGTGTTATAGCCT
CTGCTGAGAAAACCAGTTTTTCAGCTATGAAAACAGCTTTCTATGAAATAATGAGAAAACGACAGGTACAACCTGTCGGTGTCCTACCTTGGGCAACATT
CGGTTGCAGTATTGCAACTTGCTCAGCATTGCTCATGCATGGAGATGGGATTGAATGTGCAGTTGAATCTCTTCCTGCAGCCCCTTCTATCGCCAGTTTG
GGTCGTGGGGTTCAGAGTTTGCATCGGGCATCTCAAGTAATTGGGCAGACAGATGGCCCCAGGATACAGAAATCTATAGAGTCGTTGATGTACAGGTTGA
AGAAAGTAAACATGCAATAA
AA sequence
>Potri.007G124700.1 pacid=42766110 polypeptide=Potri.007G124700.1.p locus=Potri.007G124700 ID=Potri.007G124700.1.v4.1 annot-version=v4.1
MALEFIYSLQNVWPLSILKADDLKASDRIVRKLSIPENTKSFVFAVRDPKSQSVIYILCAQNLSERSAVDVECLIREIRPDAVVAQVGHSPLVQIQSEES
ELGNIADDLVPTSSFGVIKRCFLNKINKEKYEDLAGSLVLREIFGTGFHGHILAAKKVAEEVGSSFLVLETSSINTVIGDNSSSEVDTGSEVDTGSRVHA
FVSSLVPQKAGSISLQSSRRFSLDDNVQSRMVKLSSSYMDLSMRKLRPSSSVSESGLKEIHPGNSFQVPPFAQSVYPLLQDLHNIFIDLPSIGRALAFAQ
KMLYDVNRGEAVDTRIISEVYTFRVAVEGLRISLNNAGRFPIKELGKPNKTKIEFSELQVQDKSHALIAQALQSQTRKFKTIVAVVDASGLGGIRKHWNT
PVPPEVRDLVGQLVTECESDGEVPNHAEKRRLLSNKYLVAVGAGATAVFGASSLSKVVPASTFVKVVTFKLPTSLKLLLTQTQKITAISMGKTLGPTKLL
APGLANSGANATSALKAATSAEKIRTVVHSVIASAEKTSFSAMKTAFYEIMRKRQVQPVGVLPWATFGCSIATCSALLMHGDGIECAVESLPAAPSIASL
GRGVQSLHRASQVIGQTDGPRIQKSIESLMYRLKKVNMQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G43250 unknown protein Potri.007G124700
[exp]
0 1
AT5G40400 Pentatricopeptide repeat (PPR)... Potri.017G071600
[exp]
2.44 0.9062
AT5G13970 unknown protein Potri.002G238100
[exp]
2.82 0.8952
AT2G44410 RING/U-box superfamily protein... Potri.009G023300
[exp]
3.46 0.8961
AT5G22510 INV-E, At-A/N-I... Arabidopsis alkaline/neutral i... Potri.004G186500
[exp]
5.38 0.9077
AT1G80150 Tetratricopeptide repeat (TPR)... Potri.001G171300
[exp]
5.47 0.8950
AT2G30780 Tetratricopeptide repeat (TPR)... Potri.006G243000
[exp]
6.24 0.8848
AT5G53400 BOB1, BOBBER1 BOBBER1, HSP20-like chaperones... Potri.001G132500
[exp]
6.92 0.8780
AT2G31600 unknown protein Potri.017G035200
[exp]
7.00 0.8927
AT4G15820 unknown protein Potri.008G222000
[exp]
8.00 0.8880
AT5G46410 SSP4 SCP1-like small phosphatase 4 ... Potri.011G078300
[exp]
8.77 0.8870

Potri.007G124700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.