Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49150 992 / 0 GEX2, ATGEX2 gamete expressed 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025556 [exp] 1196 / 0 AT5G49150 928 / 0.0 gamete expressed 2 (.1) Lus10027014 [exp] 192 / 3e-54 AT5G49150 150 / 3e-40 gamete expressed 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF00630 [poplar] [flax] Filamin Filamin/ABP280 repeat
Representative CDS sequence Show only first row Show all	>Potri.007G124900.3 pacid=42766229 polypeptide=Potri.007G124900.3.p locus=Potri.007G124900 ID=Potri.007G124900.3.v4.1 annot-version=v4.1 ATGGCACTCGAAATTCACTTAGTTTTACTCTCTTACCTCATTTTCATTGCATCATTGGCTTCTACACCTGTAAATTCAGAACAAACACAAGGACCCTACT TTGCATTCAGTTGGTTAAGCGACAACAACACATTCCAAGCAGGAGATGTTGCAACTATAAAGATCAAAGTGCTAGGAGAGTTTGACAGGAGTAAAGGAAA TGCTTTTAGTCCTAAAATAACAGTGAATGGCAAGATGGGGAATTCTTGTTTTGTGTCTGGTGTTTTACTTGATGTTGCAGGAGAGGATACGGATACGTGG AGAATTCTTTTCACTCCAATACGGGTTGGAGTTTTTAATGTTTTTATTGAAGACGGCCCTTTTCATGTCTTTGATTCTTCTCTCCATTTTGAAGTTAAAG CAGGGAAAATATATGCATCTGCCTGCATTGCGTCATGGAGGGATCTCGAAAATGAGTTTGAAGCTGGGGCTAAAGCTACAGTTTTGATTGTTCCTAGAGA TGCATTTGGGAATAATGTTACTTCAACGGGACAAGAACTACGTCCTTTTAATTTTACTGTGTCTGAACTTTACGAAAACGGTAGCATTGCCAATGTGCCA GACATCACTCACATAGGCTGGAATGAATTTGGTCAGATCATTCTCGAGTTTATTGCTACAAAATCTGGAAATTTATTGTTGCATGTGGAAGGAGGAAATC AGACCTTGAATGGCTGTCCGCTTATGTATAAGGTGAATCCAGGACCTGTCGATGTTTCCAATTGTGAGGCCACTTGGAAGTTTGAAACAAATGTATGGCA AATATTCTCCAAGATGGAAACTTGTATACACCAGAAAGATAAATATGGGAACCCTGTTCTAGGATTCTATGAATTCGACACCAATGTTGTTGAAGAGGAG ATGAACCTGTCTATACCTCTTGCAGATATGAGCTTCACCGAGGTGATGCCAGGAATTCAGTTATGTTCCTTCAGTCTGCTGGAACCAGGAAACTTCTTGT TCACTATATCAGATACAAAACATAATAGAAGCATCTCCAACATGCCATTTTCTTTTAATGTGTTCATAGGTTATGCTGATGGATCATCCAGCATAGTCAA TGGATCTGGTTTAAATGATTCCACTGCTGGTGAAATTGCACAATTTTCAATTTATTTGAATGACATTTTTCAATATCCATCTTTTGTCGGAGTAGAAAGC ATTCGAGTGCAGATAATAAGGGAAACTGATTCCTACTCAGTAAAGCCAAGCATCAATCCAATTGTTAATGGAAATGTATCTACTCCAAGAGCGGGCAATA GTTATATCCGTCAAGCAGAAATTGCTCTGGCACCGTCAGAAATTGTTCCTGTATCCTCAGTTGATCTAGGAAAAATTTCTACAGGAAACTCAAAAGTTCT GGCCAGTGCTTTTAATGTGATTTACACTCCTGAAAAGAGTGGAATCTATGAAATTTATGTGTTCTGTGGAAATGTTTTGCTGAATGGTGGCCATTCATTC AGAAAGGAAGTGAGAGCAGGTGAGGTTAATGTATCACTCTCGACAATTCAGAAATTTTCTTTGAGGGCGCCAAAGATGATTGAAAATGAAATGGCAGTGC AACTGGTGGATTCATTTTTTAATCCTGTCCTATCCCAGCGGTCAAGACTGACACTAGAGATAGCTTCAGTTAACAAGTCTGGTTTTTCGAGTGGAATGTT TGTGGATAACGATAATGGTACATACTGCATTCGATATGTGGTTAAGGATGGTGGAACTTATGAGATGTGTGTTTCATTTGATGGCAAACGTTTGTCACCC TGCCCCTTCGGAGTCAACGTGTATGGTGTTGAATACTTTCCCAAGGCCAAGGACGATAACATTTCGGTTTGGGAGGATGAGTCTATTGCTTTCGATGTCT TGGCAAATGACTACTTTGCCGGCAACAATGCAAGTATTGTTGAATTATCAAAACCAGATCGTGGTTCGCTTTTACAGAATGGAAATCTCTTTAGATACAC TCCTTACAAAGATTATTACGGGAATGACTCTTTTACATACACACTATCTGATGTAAATGGAAACCTTGCTTCTGCTTCTGTAATCATTTCTGTTCTCAAC ATCCCACCTCAGTTCATTTCCTTTCCAATCCAATTGCAAGCAACTGAAGATGTGATAGGTCCCAGATATGGTGGTTTCTCTGCGATTGTGATAAAACACT CGGATCCAACAGAGAAAATCTGTGTCACACTCAGCGCTCGATCTGGGACTGTGTTTTTGTCTCCTGTGCTGATGCAGTTTTGGCAGCCCATTTGGGGTGA ATTTTCTGCAAAGAAAGGGGATGATGCAGCTAAAGATTTAATCTTAGAAGGCGGTGTAGAAGCAATCAATCTAGCCCTTCAATCGATTCAGTATCTTGGA AGTGAGAATTTCTACGGGGATGATGCTATTCATGTTTCTGCCAGCAACAAGAATGGAAAGAATGACATGGATGTTCCAGTTTCTGTTGAGCCTGTCAACG ATCCTCCGGTTATTAAAATCCCTAAATTTATCATACTGAAGAGTAACGAGGACGAGTCACTGATATTTGACAAAGCGATAGACAAGTTTGAGTTCTCTGT TGGAGATCCAGACCTTCTTGGATACCCTGGCAATGAGTCTGGATTTATAGTCACATTTTCAGTGGAAGTAGACAAGGGAGTTTTGGTAACCAGTCTAGCA GCTGAGCTTCTTAAGACAACTGAACTTAAGGTGATGAGTAGTTATCAGTGGCAACCAATACAGACATATGTTTCTATCTCAAGACATTTTATGGTCAGAG CTAATGGAGTCAGATTCCGGGGGCCGCTTAACGAATGCAACAGTGTCATGCAACAACTGTCCTATGATGGTAGAGAAAGCGATGCCATTTTAACTGTGAA ATTAAATGATATGGGACATTATGGGTGTTCTTCAGACTGCACCGACAAGATTGCAGTGCCTTTACATGCTGAGGCTACAGTACAGCTTATCCGAAGAAGG TCAATGAGTTCATTGTTAGCTCACACCCTTGGATCAGCTATCTTAGTTGAGTTTCTTATGGTGTTTTCTCTAGGAGGGATTCTTCTGTTCTTTACATGCA AATGCGCAATGCATCTTGCAAATGAAAGAAGAAGAATCAGTGTCAAGAATTCTCAGCTATCTAGTGTGCAGAATTCCCAGAAAAAAAGTCAGTATACAGA TTTTTCGAAGGATATGACAAACTTCACATGCTGTTGCTCAAGCCCCTTCTTGCTTAGTGGCCAAACTTCCAACTTTCGACAACGCTCCAATCAACGGTTA AGAGTTGAAGAAACTGGCAAGAACATAAGTAGCCCTCCTGGATCTTCTAGCAGCCATCATCTACAGACTCCACCTGGTCTTACCCCGCTTGTTATTGAGA AGGATCAAAAGTAA
AA sequence Show only first row Show all	>Potri.007G124900.3 pacid=42766229 polypeptide=Potri.007G124900.3.p locus=Potri.007G124900 ID=Potri.007G124900.3.v4.1 annot-version=v4.1 MALEIHLVLLSYLIFIASLASTPVNSEQTQGPYFAFSWLSDNNTFQAGDVATIKIKVLGEFDRSKGNAFSPKITVNGKMGNSCFVSGVLLDVAGEDTDTW RILFTPIRVGVFNVFIEDGPFHVFDSSLHFEVKAGKIYASACIASWRDLENEFEAGAKATVLIVPRDAFGNNVTSTGQELRPFNFTVSELYENGSIANVP DITHIGWNEFGQIILEFIATKSGNLLLHVEGGNQTLNGCPLMYKVNPGPVDVSNCEATWKFETNVWQIFSKMETCIHQKDKYGNPVLGFYEFDTNVVEEE MNLSIPLADMSFTEVMPGIQLCSFSLLEPGNFLFTISDTKHNRSISNMPFSFNVFIGYADGSSSIVNGSGLNDSTAGEIAQFSIYLNDIFQYPSFVGVES IRVQIIRETDSYSVKPSINPIVNGNVSTPRAGNSYIRQAEIALAPSEIVPVSSVDLGKISTGNSKVLASAFNVIYTPEKSGIYEIYVFCGNVLLNGGHSF RKEVRAGEVNVSLSTIQKFSLRAPKMIENEMAVQLVDSFFNPVLSQRSRLTLEIASVNKSGFSSGMFVDNDNGTYCIRYVVKDGGTYEMCVSFDGKRLSP CPFGVNVYGVEYFPKAKDDNISVWEDESIAFDVLANDYFAGNNASIVELSKPDRGSLLQNGNLFRYTPYKDYYGNDSFTYTLSDVNGNLASASVIISVLN IPPQFISFPIQLQATEDVIGPRYGGFSAIVIKHSDPTEKICVTLSARSGTVFLSPVLMQFWQPIWGEFSAKKGDDAAKDLILEGGVEAINLALQSIQYLG SENFYGDDAIHVSASNKNGKNDMDVPVSVEPVNDPPVIKIPKFIILKSNEDESLIFDKAIDKFEFSVGDPDLLGYPGNESGFIVTFSVEVDKGVLVTSLA AELLKTTELKVMSSYQWQPIQTYVSISRHFMVRANGVRFRGPLNECNSVMQQLSYDGRESDAILTVKLNDMGHYGCSSDCTDKIAVPLHAEATVQLIRRR SMSSLLAHTLGSAILVEFLMVFSLGGILLFFTCKCAMHLANERRRISVKNSQLSSVQNSQKKSQYTDFSKDMTNFTCCCSSPFLLSGQTSNFRQRSNQRL RVEETGKNISSPPGSSSSHHLQTPPGLTPLVIEKDQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49150		GEX2, ATGEX2	gamete expressed 2 (.1)		Potri.007G124900 [exp]	0	1
AT2G17080			Arabidopsis protein of unknown...		Potri.005G249100 [exp]	4.24	0.7507
AT3G47570			Leucine-rich repeat protein ki...		Potri.016G029900 [exp]	15.03	0.6102
					Potri.019G016702 [exp]	17.17	0.7085
					Potri.004G110976 [exp]	24.61	0.5851
					Potri.017G046301 [exp]	32.40	0.6985
AT1G11040			HSP40/DnaJ peptide-binding pro...		Potri.001G211800 [exp]	36.49	0.5989
AT2G36450	AP2_ERF	HRD	HARDY, Integrase-type DNA-bind...		Potri.006G021000 [exp]	39.37	0.6747
AT5G28680		ANX2	ANXUR2, Malectin/receptor-like...		Potri.005G055200 [exp]	56.28	0.6813
AT1G31170		ATSRX	sulfiredoxin (.1.2.3.4)		Potri.015G124601 [exp]	56.32	0.6733
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Potri.001G356000 [exp]	56.56	0.6062

Compare expression of checked genes

Potri.007G124900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.