Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38260 318 / 6e-100 Protein kinase superfamily protein (.1) AT1G66980 310 / 1e-92 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT1G66910 298 / 5e-92 Protein kinase superfamily protein (.1) AT4G18250 301 / 3e-91 receptor serine/threonine kinase, putative (.1) AT1G70250 296 / 5e-90 receptor serine/threonine kinase, putative (.1) AT1G66930 289 / 3e-88 Protein kinase superfamily protein (.1) AT1G66920 287 / 3e-88 Protein kinase superfamily protein (.1.2) AT5G38280 288 / 5e-88 PR5K PR5-like receptor kinase (.1) AT1G67000 288 / 4e-86 Protein kinase superfamily protein (.1) AT5G39030 284 / 3e-85 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G125800 [exp] 997 / 0 AT5G38260 308 / 1e-95 Protein kinase superfamily protein (.1) Potri.007G125450 [exp] 977 / 0 AT5G38260 300 / 2e-92 Protein kinase superfamily protein (.1) Potri.007G126100 [exp] 944 / 0 AT1G70250 290 / 3e-87 receptor serine/threonine kinase, putative (.1) Potri.007G125200 [exp] 858 / 0 AT5G38260 300 / 2e-94 Protein kinase superfamily protein (.1) Potri.015G018600 [exp] 603 / 0 AT1G66920 351 / 9e-113 Protein kinase superfamily protein (.1.2) Potri.017G007900 [exp] 526 / 1e-179 AT5G38260 324 / 1e-101 Protein kinase superfamily protein (.1) Potri.017G008800 [exp] 511 / 7e-174 AT5G38280 330 / 1e-103 PR5-like receptor kinase (.1) Potri.017G034500 [exp] 485 / 9e-169 AT5G38260 336 / 6e-111 Protein kinase superfamily protein (.1) Potri.017G008600 [exp] 477 / 3e-161 AT5G38260 325 / 9e-103 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025492 [exp] 557 / 0 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10014924 [exp] 545 / 0 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10022359 [exp] 503 / 4e-172 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10008362 [exp] 485 / 8e-166 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10025554 [exp] 418 / 3e-140 AT5G38260 220 / 2e-64 Protein kinase superfamily protein (.1) Lus10025545 [exp] 365 / 9e-122 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10008335 [exp] 375 / 1e-120 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10025553 [exp] 337 / 7e-107 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1) Lus10027085 [exp] 317 / 2e-103 AT1G66980 275 / 1e-84 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025547 [exp] 320 / 4e-101 AT1G66920 345 / 2e-111 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.007G125000.1 pacid=42765765 polypeptide=Potri.007G125000.1.p locus=Potri.007G125000 ID=Potri.007G125000.1.v4.1 annot-version=v4.1 ATGTCTGGGTTCCTCTTTGCTTGCTACCTTGCCCTGCTACTGCTACTACTAGTCTTCCAAACCAGCAACTGCAACGATACCAATCTCTGTGCCCCTTCAT GTGGAAATCATAATATTAGCTACCCTTTTAGCCTAGAAAGTGATCCATCTTACTGTGGAAAACCTCACCATACCCTCCACTGCGAGAAAAATATCTCCAC AGTATTGTATTTGAAGTCGAGAAAATACTACGTGCAGGCAATCAACTACAACAACTTGACAATTCGAGTGGTGGATTCTGGGGTTATAAAAAATGATTGC TCTTCTCTTCCTAATTTTACTTTGACATATGCAAGCCTAGATGATTTCATGAATCCATATACATGGTTTCAATACAAAATGACAGAGCGGAAACGGATTC CTCGATACAAGCTTCTACCTTTATCGCAGATGATGATTTTTATTAGCTGTGGAAATCCAGTGAATTCTCCTCTGTACGTAGACACTGGTACTTGCCTTCA TGGAGCAAAATCTTCCAATGTTTCTCCCTTGATGCATTCTTATGTGAATGTTGCTGGCATGAAGGCCTCGGAGTTGATGAAACTGTGCAGCTTAGAGAGG ATGACGTTGTTGCCAGCCAAGGATTACAAGAATATATCCTTTAAGGAAATTCACAGTCAGCTGGCATATGGGTTTGAGCTTTCATGGCACAAGAGCAAGT GTGGAAGCTGTGCATCTATTTGCTACATCGATGATTCGAACCAGACAAAATGCGCAGGATCTTCTTGGCTTGAGATAACCGAAGTCGTCCTGCTGTGTGT ATTCCTATTAATTGCACTACTTCAGGGGCCAAAATTTATCTTTGGGAGTCCTTTTGTGATTGCATTCTTGATCTATAAATGGCAACGAAGACATCTATCA GCATATGACACAGTTGAGGAATTCCTACACACTCATAACAATCTTATGCCAGTAGTAAGGTATTCTTATTCAGAGATTAAGAAGATGACCGGAGGTTTCA AGGAAAAGTTGGGTGAAGGAGGTTTTGGTTGCGTGTATAAAGGAAAGCTTCGCAGTGGACATTTTGCAGCGATAAAATTGCTGGGCAAATCCAACGCTAA TGGACAAGATTTCATCAATGAAGTCGCTACCATTGGAAGGATTCGCCACACCAATGTAGTGCAACTAGTTGGTTTTTGTGCTGAGGGATCAAAGCGCGCT CTTGTATACGATTTCATGCCCAATGGATCTCTCAATAATTTCATCTTTTCTGAAGAAAGATCTGTCTCTTTAAGCTGGGAAAAACTGCATGAGATTTCCC TTGGAGTGGCTCATGGCATCGAATATCTACATCGAGGTTGTGAGATACAGATCCTACATTTTGACATCAAGCCTCACAACATTCTACTCGATGAACATTT CACTCCAAAAGTTTCTGACTTTGGACTTGCTAGGTTGTGTCCACCAAATGAGAGTCTTAAATCTCTCACTGCAGCGGGGGGAACGATAGGTTACATGGCG CCAGAACTGTTCTACAAGAACATCGGGCGCACCTCATACAAAGCTGATGTTTATAGCTTTGGAATGTTGCTATTGGAAATGGCAGGCAGAAGGAAGAATC TGAACGTATTGACAGAGAATTCAAGCCAAATTTACTGGCCAGATTGGGTTCATGAACAAGTCTCTAATGAGAAGGCTATAGAGATTGGAGATGGTGGCAC AGAAGAGGAAGAAAAGATAGTCAAGAAGATGATTATTGCAGGGTTGTGGTGTATACAAATGAATCCTATGAATCGCCCTGCAATGAATGAAGTTGTGGAG ATGCTTGAAGGAGATATGGAAAGCCTGCAACTTCCTCCGAAACCTGTTCTAAATCTATATGAGAAACCAATGAGCACTTGTGGAGAGTCATCTTTCATGT CTGATTATTCTACTGGATCAGTCAGCTTGATTGAAAATGCATATAATTAA
AA sequence Show only first row Show all	>Potri.007G125000.1 pacid=42765765 polypeptide=Potri.007G125000.1.p locus=Potri.007G125000 ID=Potri.007G125000.1.v4.1 annot-version=v4.1 MSGFLFACYLALLLLLLVFQTSNCNDTNLCAPSCGNHNISYPFSLESDPSYCGKPHHTLHCEKNISTVLYLKSRKYYVQAINYNNLTIRVVDSGVIKNDC SSLPNFTLTYASLDDFMNPYTWFQYKMTERKRIPRYKLLPLSQMMIFISCGNPVNSPLYVDTGTCLHGAKSSNVSPLMHSYVNVAGMKASELMKLCSLER MTLLPAKDYKNISFKEIHSQLAYGFELSWHKSKCGSCASICYIDDSNQTKCAGSSWLEITEVVLLCVFLLIALLQGPKFIFGSPFVIAFLIYKWQRRHLS AYDTVEEFLHTHNNLMPVVRYSYSEIKKMTGGFKEKLGEGGFGCVYKGKLRSGHFAAIKLLGKSNANGQDFINEVATIGRIRHTNVVQLVGFCAEGSKRA LVYDFMPNGSLNNFIFSEERSVSLSWEKLHEISLGVAHGIEYLHRGCEIQILHFDIKPHNILLDEHFTPKVSDFGLARLCPPNESLKSLTAAGGTIGYMA PELFYKNIGRTSYKADVYSFGMLLLEMAGRRKNLNVLTENSSQIYWPDWVHEQVSNEKAIEIGDGGTEEEEKIVKKMIIAGLWCIQMNPMNRPAMNEVVE MLEGDMESLQLPPKPVLNLYEKPMSTCGESSFMSDYSTGSVSLIENAYN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38260			Protein kinase superfamily pro...		Potri.007G125000 [exp]	0	1
AT1G70250			receptor serine/threonine kina...		Potri.007G126100 [exp]	5.09	0.7930
AT1G61250		SC3	secretory carrier 3 (.1.2)		Potri.011G045100 [exp]	20.19	0.7197	PSAM2.2
AT5G18470			Curculin-like (mannose-binding...		Potri.001G437875 [exp]	38.47	0.7056
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Potri.001G222500 [exp]	44.49	0.6859
AT4G33360		FLDH	farnesol dehydrogenase, NAD(P)...		Potri.002G127400 [exp]	57.44	0.6857
AT4G31130			Protein of unknown function (D...		Potri.018G000600 [exp]	69.05	0.6565
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Potri.005G113700 [exp]	101.39	0.6513
AT3G24750			unknown protein		Potri.002G240300 [exp]	109.83	0.6136
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.003G176900 [exp]	146.04	0.6213	CHS6,Pt-CHS.4
AT5G20660			Zn-dependent exopeptidases sup...		Potri.008G039400 [exp]	150.59	0.5864

Compare expression of checked genes

Potri.007G125000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.