Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38260 300 / 1e-92 Protein kinase superfamily protein (.1) AT1G66910 296 / 7e-91 Protein kinase superfamily protein (.1) AT1G66980 305 / 1e-90 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT1G67000 300 / 2e-90 Protein kinase superfamily protein (.1) AT1G70250 295 / 5e-89 receptor serine/threonine kinase, putative (.1) AT1G66920 290 / 6e-89 Protein kinase superfamily protein (.1.2) AT1G66930 290 / 1e-88 Protein kinase superfamily protein (.1) AT5G38280 289 / 4e-88 PR5K PR5-like receptor kinase (.1) AT4G18250 291 / 1e-87 receptor serine/threonine kinase, putative (.1) AT5G39030 281 / 7e-84 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G125800 [exp] 1116 / 0 AT5G38260 308 / 1e-95 Protein kinase superfamily protein (.1) Potri.007G125000 [exp] 991 / 0 AT5G38260 318 / 7e-100 Protein kinase superfamily protein (.1) Potri.007G126100 [exp] 915 / 0 AT1G70250 290 / 3e-87 receptor serine/threonine kinase, putative (.1) Potri.007G125200 [exp] 807 / 0 AT5G38260 300 / 2e-94 Protein kinase superfamily protein (.1) Potri.015G018600 [exp] 635 / 0 AT1G66920 351 / 9e-113 Protein kinase superfamily protein (.1.2) Potri.017G007900 [exp] 548 / 0 AT5G38260 324 / 1e-101 Protein kinase superfamily protein (.1) Potri.017G009400 [exp] 543 / 0 AT5G38280 329 / 4e-103 PR5-like receptor kinase (.1) Potri.017G009100 [exp] 538 / 0 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1) Potri.017G009500 [exp] 537 / 0 AT5G38280 327 / 3e-102 PR5-like receptor kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025492 [exp] 564 / 0 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10014924 [exp] 561 / 0 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10022359 [exp] 495 / 1e-168 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10008362 [exp] 475 / 1e-161 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10025554 [exp] 421 / 3e-141 AT5G38260 220 / 2e-64 Protein kinase superfamily protein (.1) Lus10008335 [exp] 383 / 3e-123 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10025545 [exp] 368 / 7e-123 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10027085 [exp] 325 / 8e-107 AT1G66980 275 / 1e-84 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025553 [exp] 332 / 2e-104 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1) Lus10025547 [exp] 317 / 1e-99 AT1G66920 345 / 2e-111 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.007G125450.1 pacid=42765126 polypeptide=Potri.007G125450.1.p locus=Potri.007G125450 ID=Potri.007G125450.1.v4.1 annot-version=v4.1 ATGTCTAGGTTTCTCTTTGCTGGCTACATAGCCTTACTCCCCCTGCTGCTAGTCTTCCAAACCAGCAACTGCAAGGATACCAATCTCTGTGCCCCTTCAT GTGGAAATCATACTATTAGCTACCCCTTTAGCCTAGAAAGTGATCCATCTAACTGTGGAAATCATAATATTAGCTACCCCTTTAACTATACCCTCCACTG CGAGAAAAATAACTCCACAGTATTGTATTTAGACTCACGAAAATACTACGTGCAGGCAATCAACTACAACAACTTGACAATCCGAGTGGTTGATGCTGGT GTTAAAGAAAATGATTGCTCTTCGCTTCCTAATTTTTCTTTAGCATTTGATAGCCTAGGCAAATCCAGAAGGGCATATACTATTTTTACTTTAACATTTA CAGGCTTCGATTATATCGCAGATGATGATTATCCATATACATGGTTTCAATTCAAAAAGACAGGGTGGGAGTGGTCTCCCACATACAAGCCTCTCCCTTT ATCGCAGATGATGATTTTCATAAACTGCGCAAATCCAGTGGATTCTCCTCTGTACGTTGGCACTGGTACTTGCCTTAATGGAGAAAAATCTTATGTGAAT GTTGGTGGGATGAAGGCTTCGGATCTGATGGAACTGTGCAGCTTAGAGAGGATGACGTTGTTGCCAGTCAAGGATTACAAGAGCATGTCCTATAAGGAAA TTCACAGTCAGCTCGCATATGGGTTTGAGCTTTCATGGCACAATAGCAGGTGTGGAAGCTGTGCAGGTATTTGCTACATCTATGATTCGAACAAGACACG CTGCGCAGGACTTTCTTGGTTCGAATTAATCGCAGGCGTGCTGCAGACTGTATTCCTGTTCATTGCACTACTTCAGGGGACAAAATTTATCTTTGGGAGT CCATTTGTGATTGCATTCTTGATCTATAAATGGCGACGAAGACATCTATCAGCATATGACACAGTTGAGGAATTCCTACAGACTCATAACAATCTTATGC CAGTCCTAAGGTATTCTTATTCGGAGATTAAGAAGATGACTGGAGGTTTCAAGGAGAAGTTGGGAGAAGGGGGTTTCGGTTGCGTGTATAAAGGAAAGCT TCGCAGTGGACATTCTGCAGCGATAAAATTGCTGGGCAAATCCAAGGCTAATGGACAAGATTTCATCAATGAAGTCGCTACCATTGGAAGGATTCGCCAC ACCAATGTAGTGCAACTAGTTGGTTTTTGTGCTGAGGGATCAAAGCGCGCTCTTGTATACGATTTCATGCCCAATGGATCTCTCAATAATTTCATTTTTT CTCAAGAAAGTTCTGTCTCTTTAAGCTGGGAAAAACTGCATGAGATTTCCCTTGGAGTGGCTCATGGCATCGAATATCTACATCGAGGTTGTGAGATGCA GATCCTACATTTTGACATCAAGCCTCACAACATTCTTCTGGATGAAAACTTCGCTCCAAAAGTTTCTGACTTTGGGCTTGCTAGGTTGTGCCCAGCAAAT GAGACCGAGAAATCTCTCACTGCAGCAGGGGGAACAATAGGTTACATGGCGCCAGAACTGTTCTACAAGAATATCGGGCGCGTCTCATACAAAGCTGATG TTTATAGCTTTGGAATGTTGCTATTGGAAATGGCAGGCAGAAGGAAGAATCTGAACGCATTGACAGAGAATTCAAACCAAATTTACTGGCCAGATTGGGT TCATGACCAAGTCTCTAATGAGAAGGCTATAGAGATTGGAGATGGTGGCACGGAAGAGGAAGAAAAGATAGTCAAGAAGATGATTATTACAGGGTTGTGG TGTATACAAATGAACCCTCTGAATCGGCCCGCAATGAACGAAGTTGTGGAGATGCTTGAAGGAGACATTGAAAGCCTGCAACTGCCTTCGAGACCTGTTC TATATCCAGATGAGAAGCCAATGAACACTTGTGGAGAGTCATCTTCCATGTCTGATTATTCTTCGAAATCAGTCAGCTTGATTGAAAATGCATCTAATTA A
AA sequence Show only first row Show all	>Potri.007G125450.1 pacid=42765126 polypeptide=Potri.007G125450.1.p locus=Potri.007G125450 ID=Potri.007G125450.1.v4.1 annot-version=v4.1 MSRFLFAGYIALLPLLLVFQTSNCKDTNLCAPSCGNHTISYPFSLESDPSNCGNHNISYPFNYTLHCEKNNSTVLYLDSRKYYVQAINYNNLTIRVVDAG VKENDCSSLPNFSLAFDSLGKSRRAYTIFTLTFTGFDYIADDDYPYTWFQFKKTGWEWSPTYKPLPLSQMMIFINCANPVDSPLYVGTGTCLNGEKSYVN VGGMKASDLMELCSLERMTLLPVKDYKSMSYKEIHSQLAYGFELSWHNSRCGSCAGICYIYDSNKTRCAGLSWFELIAGVLQTVFLFIALLQGTKFIFGS PFVIAFLIYKWRRRHLSAYDTVEEFLQTHNNLMPVLRYSYSEIKKMTGGFKEKLGEGGFGCVYKGKLRSGHSAAIKLLGKSKANGQDFINEVATIGRIRH TNVVQLVGFCAEGSKRALVYDFMPNGSLNNFIFSQESSVSLSWEKLHEISLGVAHGIEYLHRGCEMQILHFDIKPHNILLDENFAPKVSDFGLARLCPAN ETEKSLTAAGGTIGYMAPELFYKNIGRVSYKADVYSFGMLLLEMAGRRKNLNALTENSNQIYWPDWVHDQVSNEKAIEIGDGGTEEEEKIVKKMIITGLW CIQMNPLNRPAMNEVVEMLEGDIESLQLPSRPVLYPDEKPMNTCGESSSMSDYSSKSVSLIENASN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38260			Protein kinase superfamily pro...		Potri.007G125450 [exp]	0	1
AT1G19260			TTF-type zinc finger protein w...		Potri.014G176150 [exp]	1.41	0.9807
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Potri.004G052600 [exp]	1.73	0.9801
AT5G38260			Protein kinase superfamily pro...		Potri.007G125600 [exp]	2.82	0.9681
AT5G01540		LECRKA4.1	lectin receptor kinase a4.1 (....		Potri.016G123501 [exp]	3.46	0.9674
AT4G18960	MADS	AG	AGAMOUS, K-box region and MADS...		Potri.011G075800 [exp]	3.87	0.9676	AG1.1
AT5G36930			Disease resistance protein (TI...		Potri.013G098100 [exp]	4.24	0.9575
AT5G36930			Disease resistance protein (TI...		Potri.013G097050 [exp]	4.47	0.9538
AT5G01550		LECRKA4.2	lectin receptor kinase a4.1 (....		Potri.016G122650 [exp]	4.89	0.9587
AT5G01550		LECRKA4.2	lectin receptor kinase a4.1 (....		Potri.016G123300 [exp]	7.21	0.9511
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.009G099032 [exp]	7.48	0.9587

Compare expression of checked genes

Potri.007G125450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.