Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38260 357 / 4e-115 Protein kinase superfamily protein (.1) AT1G66920 353 / 5e-114 Protein kinase superfamily protein (.1.2) AT1G66910 351 / 9e-113 Protein kinase superfamily protein (.1) AT1G70250 341 / 2e-107 receptor serine/threonine kinase, putative (.1) AT1G66930 335 / 2e-106 Protein kinase superfamily protein (.1) AT4G18250 337 / 2e-105 receptor serine/threonine kinase, putative (.1) AT5G38280 331 / 7e-105 PR5K PR5-like receptor kinase (.1) AT1G67000 333 / 2e-103 Protein kinase superfamily protein (.1) AT1G66980 323 / 3e-98 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT5G39030 315 / 1e-97 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G126200 [exp] 1021 / 0 AT1G66920 333 / 3e-107 Protein kinase superfamily protein (.1.2) Potri.007G125100 [exp] 899 / 0 AT1G66920 347 / 2e-113 Protein kinase superfamily protein (.1.2) Potri.017G035500 [exp] 803 / 0 AT1G66920 336 / 2e-107 Protein kinase superfamily protein (.1.2) Potri.007G125900 [exp] 791 / 0 AT1G66920 0 / 1 Protein kinase superfamily protein (.1.2) Potri.015G018200 [exp] 714 / 0 AT1G66920 368 / 1e-119 Protein kinase superfamily protein (.1.2) Potri.012G003500 [exp] 685 / 0 AT1G66920 358 / 4e-116 Protein kinase superfamily protein (.1.2) Potri.015G018000 [exp] 682 / 0 AT1G66920 355 / 2e-114 Protein kinase superfamily protein (.1.2) Potri.012G003000 [exp] 672 / 0 AT1G66920 356 / 5e-115 Protein kinase superfamily protein (.1.2) Potri.012G002800 [exp] 657 / 0 AT1G66920 346 / 2e-111 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025553 [exp] 632 / 0 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1) Lus10014923 [exp] 612 / 0 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1) Lus10025547 [exp] 568 / 0 AT1G66920 345 / 2e-111 Protein kinase superfamily protein (.1.2) Lus10026761 [exp] 504 / 3e-174 AT1G67000 334 / 4e-107 Protein kinase superfamily protein (.1) Lus10014924 [exp] 372 / 5e-121 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10022359 [exp] 334 / 5e-107 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025545 [exp] 317 / 1e-103 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10025492 [exp] 326 / 6e-103 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10008335 [exp] 326 / 2e-102 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10008362 [exp] 278 / 3e-86 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.007G125600.1 pacid=42764978 polypeptide=Potri.007G125600.1.p locus=Potri.007G125600 ID=Potri.007G125600.1.v4.1 annot-version=v4.1 ATGATGAGAGGTTCAACAAAAAAGGCAATATGCCTGTTCTATTTCATGTTCATTGCAGAACTTGGAGCAAGCCTTAATTGCACAGGATCTTGTGGGAACC GTGGCCTTCACATCCGATTTCCATTCTGGATCAAGGATAGGCAGCCAGAACAGTGTGGCTATCCTGGTTTTGATCTGTCTTGCAATGAGAAGGGCGATAT AGTGCTCGAGCTGCCAGCTGCAGTGAAGCTCCACATAGAAAAGATTGACTACGAAAATCAAGTTATTTATGCAACAGATCCCCAAGGTTGCCTTCGAAGC CAACACCCAAACTTCAATTCGTCCGGGTTTCACATACAGTTTAAGATGTCCAAGGTCAATTTTACCATCTTCAATTGCTCTTTAAATAATGCAATATCTC GGCGTAGGATCGCTTGTCTCAGCACTCACCAATATGATGTTCTTGCCGTTGATTCGGAACAATCTATTGATGGCAATGAGTTACTATTATCTTGTACCAA GATGTACGACCTACCTGTTCCACATGATATTCGGCTGTCCTGGTCCAATCCCAATTGTGGATCTTGTGAAGCAACAGGAAAACTATGTGGATTGAGGGAA AATAGCAGCACTGAGCTTGAAACAGAATGCTATGGCTTGCCCAGACCAAAAAAAGGTGCACGGAAAAGGAATCTGACTATAGGTGTAACCACAGGATCCA TCCTTTTCGGGGTTGTGGTCATTGCAGTCTACCAAATTTATAGCTTCAGAAAATCAGAAGAAGAATATCAGGCAAAGGTTGAAAGGTTTTTGGATGATTA CAGAGCTATGAACCCCACAAGATACTCCCATGCTGATCTCAAAAAGATGACAAATCAATTCAGGGATGAATTAGGGCAAGGAGCTTATGGAACTGTGTTC AAAGGAAAGCTAACCAGTGAGATTCCGGTGGCTGTTAAGGTTCTAAGCAATTCATCAGAAAAAGGAGAGGAATTCGTAAACGAAATGGGAACAATGGCCA GGATTCACCATGTCAATGTAGTCCGCTTGATTGGCTTCTGTGCTGATGGATTTAGACGAGCTCTAGTTTACGAGTACTTGCCAAACGATTCGCTGCAGAA GTTCATATCTTCAGCAAACGCAAGGAATGTTTTCCTTGGCTGGGAAAGGCTGCATCATATTGCCCTTGGAGTAGCCAAAGGGATTGAATATCTTCACCAG GGTTGTGACCAAACAATCCTCCACTTTGATATCAAACCACATAATATCCTGCTGGACAATGACTTCAATCCCAAGATTGCAGATTTCGGTCTGGCTAAGT TGTGTTCCAAGTATAAAAGTGCTATTTCCATGACAACAGCTAGGGGAACCGTCGGCTACATAGCACCCGAAGTGTTCTCAAGAAACTTTGGGAATGTCTC CTACAAGTCAGACGTGTACAGTTTCGGAATGATGGTGTTAGAAATGGTTGGTGGAAGGAAAAATGTTGATGATACAGCAGAAAATGGTGATCAAGTATAC TTCCCAGAATGGATTTATAATCTCTTAGAAGAAGGAGAAGACCTGCGGTTCCAAATCGAGGAAGAAGGGGATGCTGAAATTGCGAAGAAGCTAGCCATTG TGGGACTGTGGTGCATCCAGTGGAACCCAGTGGACCGTCCTTCCATGAAAATTGTTGTCCAGATGCTGGAAGGTGAAGGAGACAGGTTAAGTACACCTCC TAATCCTCTTAGCTCCACAGCTGCAAAGAGAACGAATGCAGGTATGCTAAGGAGGCATCTTCATCAAGAGTTGGCAGCCATCTCAGAAACAGAGTAA
AA sequence Show only first row Show all	>Potri.007G125600.1 pacid=42764978 polypeptide=Potri.007G125600.1.p locus=Potri.007G125600 ID=Potri.007G125600.1.v4.1 annot-version=v4.1 MMRGSTKKAICLFYFMFIAELGASLNCTGSCGNRGLHIRFPFWIKDRQPEQCGYPGFDLSCNEKGDIVLELPAAVKLHIEKIDYENQVIYATDPQGCLRS QHPNFNSSGFHIQFKMSKVNFTIFNCSLNNAISRRRIACLSTHQYDVLAVDSEQSIDGNELLLSCTKMYDLPVPHDIRLSWSNPNCGSCEATGKLCGLRE NSSTELETECYGLPRPKKGARKRNLTIGVTTGSILFGVVVIAVYQIYSFRKSEEEYQAKVERFLDDYRAMNPTRYSHADLKKMTNQFRDELGQGAYGTVF KGKLTSEIPVAVKVLSNSSEKGEEFVNEMGTMARIHHVNVVRLIGFCADGFRRALVYEYLPNDSLQKFISSANARNVFLGWERLHHIALGVAKGIEYLHQ GCDQTILHFDIKPHNILLDNDFNPKIADFGLAKLCSKYKSAISMTTARGTVGYIAPEVFSRNFGNVSYKSDVYSFGMMVLEMVGGRKNVDDTAENGDQVY FPEWIYNLLEEGEDLRFQIEEEGDAEIAKKLAIVGLWCIQWNPVDRPSMKIVVQMLEGEGDRLSTPPNPLSSTAAKRTNAGMLRRHLHQELAAISETE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38260			Protein kinase superfamily pro...		Potri.007G125600 [exp]	0	1
AT5G01540		LECRKA4.1	lectin receptor kinase a4.1 (....		Potri.016G123501 [exp]	1.00	0.9696
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Potri.004G207200 [exp]	1.73	0.9562
AT5G38260			Protein kinase superfamily pro...		Potri.007G125450 [exp]	2.82	0.9681
AT1G66920			Protein kinase superfamily pro...		Potri.007G125900 [exp]	4.47	0.9493
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Potri.004G052600 [exp]	5.29	0.9556
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Potri.015G134600 [exp]	7.61	0.9045	Pt-GA20.2,GA20ox8
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Potri.019G052200 [exp]	8.24	0.8863
AT5G01550		LECRKA4.2	lectin receptor kinase a4.1 (....		Potri.016G122650 [exp]	8.94	0.9321
AT5G09300			Thiamin diphosphate-binding fo...		Potri.005G185400 [exp]	10.81	0.9264
AT3G25950			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.008G178800 [exp]	10.95	0.9285

Compare expression of checked genes

Potri.007G125600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.