Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38260 310 / 2e-96 Protein kinase superfamily protein (.1) AT1G66920 299 / 1e-92 Protein kinase superfamily protein (.1.2) AT1G66980 307 / 2e-91 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT1G66910 296 / 6e-91 Protein kinase superfamily protein (.1) AT1G70250 298 / 4e-90 receptor serine/threonine kinase, putative (.1) AT1G67000 298 / 2e-89 Protein kinase superfamily protein (.1) AT1G66930 292 / 2e-89 Protein kinase superfamily protein (.1) AT5G38280 288 / 9e-88 PR5K PR5-like receptor kinase (.1) AT4G18250 290 / 4e-87 receptor serine/threonine kinase, putative (.1) AT5G39030 281 / 4e-84 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G125450 [exp] 1111 / 0 AT5G38260 300 / 2e-92 Protein kinase superfamily protein (.1) Potri.007G125000 [exp] 993 / 0 AT5G38260 318 / 7e-100 Protein kinase superfamily protein (.1) Potri.007G126100 [exp] 924 / 0 AT1G70250 290 / 3e-87 receptor serine/threonine kinase, putative (.1) Potri.007G125200 [exp] 810 / 0 AT5G38260 300 / 2e-94 Protein kinase superfamily protein (.1) Potri.015G018600 [exp] 611 / 0 AT1G66920 351 / 9e-113 Protein kinase superfamily protein (.1.2) Potri.017G009100 [exp] 565 / 0 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1) Potri.017G007900 [exp] 561 / 0 AT5G38260 324 / 1e-101 Protein kinase superfamily protein (.1) Potri.017G009400 [exp] 552 / 0 AT5G38280 329 / 4e-103 PR5-like receptor kinase (.1) Potri.017G008800 [exp] 540 / 0 AT5G38280 330 / 1e-103 PR5-like receptor kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025492 [exp] 570 / 0 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10014924 [exp] 547 / 0 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10022359 [exp] 497 / 3e-169 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10008362 [exp] 474 / 4e-161 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10025554 [exp] 422 / 1e-141 AT5G38260 220 / 2e-64 Protein kinase superfamily protein (.1) Lus10008335 [exp] 382 / 8e-123 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10025545 [exp] 368 / 2e-122 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10027085 [exp] 320 / 1e-104 AT1G66980 275 / 1e-84 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025553 [exp] 326 / 2e-102 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1) Lus10025547 [exp] 321 / 4e-101 AT1G66920 345 / 2e-111 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.007G125800.1 pacid=42765871 polypeptide=Potri.007G125800.1.p locus=Potri.007G125800 ID=Potri.007G125800.1.v4.1 annot-version=v4.1 ATGGCTAGGTTCCTCTTTGCTGGCTACATAGCCTTACTCCTCCTGCTGCTAGTCTTCCAAAACAGTAACTGCAAGGATACCAACTTCTGTGCCCCTTCTT CATGTGGCAATCATAATATTAGCTACCCCTTTAGCATAAACAGTGATCCATTAAACTGTGGAAAACCTAACTATACCCTCCACTGCGAGAAAAATAACTC CACAGTATTGTATTTAGACTCACGAAAATACTACGTGCAGGCAATCAACTACAACAACTTGACAATCCGAGTGGTGGATCCTGGTGTTAAAGAAAATGAT TGCTCTTCTCGTCCTGATTTTTCTTTAACATATGCAAGATTAGGTAATTCCAGAAGGGCATATACTATTTTTACTTTTATATTTACAGGCTTAGATTATA TCGCAGATGATGATTATCCATATACATGGTTTCAATACAAAAAGACAGGGTGGAAGTCGTTTCCCACATACAAGCCTCTCCCGTTATCGCAGATGATGAT TTTCATAAACTGCACAAATCCAGTGGATTCTCCTCTGTACGTTGGCACTGGTACTTGCCTTAATGGAGAAAAATCTTCCAATGTTTCACTCTCAAAGCGT TCTTATGTGAATGTTGGTGGGATGAAGGCTTCGGATCTGATGAAACTGTGCAGCTTAGAGAGGATGACGTTGTTGCCAGCCAAGGATTACAAGAATAAAT CCTTCAAGGAAATTCACAGTCAGCTGGCATATGGATTTGAGCTTTCATGGCACAATAGCATGTGTGGAAGCTGTGCATATGGATGCTACATCTATGATTC GAACCAGACAGGCTGCGCAGATGGACTTTCTTGGTTGGAATTAACCGTAGGCGTGCTGCAGACTGTAACCATTTTCATTGCACTACTTCAGGGGACAAAA TTTATCTTTGGGAGTCCGTTTGTGATTGCATTCTTGATCTATAAATGGCGACGAAGACATCTATCAGCATATGACACGGTTGAGGAATTCCTACAGACTC ATAACAATCTTATGCCAGTCGTAAGGTATTCTTATTCAGAGATTAAGAAGATGACCAGTGGTTTCAAAGAAAAGTTGGGAGAAGGAGGTTTTGGTTGCGT ATATAAAGGAAAGCTTCGCAGTGGACATTCTGCAGCAATAAAATTGCTGGGCAAATCCAAGGCTAATGGACAAGATTTCATCAATGAAGTCGCTACCATT GGAAGGATTCACCACACCAATGTAGTGCAACTAGTTGGTTTTTATGCTGAGGGATCAAAGCGCGCTCTTGTATATGATTTCATGCCGAATGGATCTCTCA ATAATTTTATTTTTTTTCAAGAAAGTTCTGTCTCTTTAAGCTGGGAAAAACTGCATGAGATTTCCCTTGGAGTGGCTCATGACATCGAATATCTACATCG AGGTTGTGAGATGCAGATCCTACATTTTGACATCAAGCCTCACAACATTCTTCTGGATGAAAACTTCGCTCCAAAAGTTTCTGACTTTGGTCTTGCTAGG TTGTGTCCAACAAATGAGAGTCTTAAATCTCTCACTGCAGCGAGGGGAACGATAGGTTACATGGCGCCAGAACTGTTCTACCAGAACATCGGGCGCGTCT CATACAAAGCTGATGTTTATAGCTTTGGAATGTTGCTATTGGAAATGGCAGGCAGAAGGAAGAATTGGAACGCATTGACAGAGAATTCAAACCAAATTTA CTGGCCAGATTGGGTTCACGACCAAGTCTCTAATGAGAAGGCTATAGAGATTGGAGATGGTGGCACGGAAGAGGAAGAAAAGATAGTCAAGAAGATGATT ATTACAGGGTTGTGGTGTATACAAATGAACCCTCTGAATCGGCCCGCAATGAACGAAGTTGTGGAGATGCTTGAAGGAGACATGGAAAGCCTGCAACTGC CTCCGAGACCTGTTCTATATCCAGATGAGAAGCCAATGAACACTTGTGGAGAGTCATCTTCCATGTCTTATTATTTTTCAGAATCACTCAGCTTGATTGA AAATGCATATAATTAG
AA sequence Show only first row Show all	>Potri.007G125800.1 pacid=42765871 polypeptide=Potri.007G125800.1.p locus=Potri.007G125800 ID=Potri.007G125800.1.v4.1 annot-version=v4.1 MARFLFAGYIALLLLLLVFQNSNCKDTNFCAPSSCGNHNISYPFSINSDPLNCGKPNYTLHCEKNNSTVLYLDSRKYYVQAINYNNLTIRVVDPGVKEND CSSRPDFSLTYARLGNSRRAYTIFTFIFTGLDYIADDDYPYTWFQYKKTGWKSFPTYKPLPLSQMMIFINCTNPVDSPLYVGTGTCLNGEKSSNVSLSKR SYVNVGGMKASDLMKLCSLERMTLLPAKDYKNKSFKEIHSQLAYGFELSWHNSMCGSCAYGCYIYDSNQTGCADGLSWLELTVGVLQTVTIFIALLQGTK FIFGSPFVIAFLIYKWRRRHLSAYDTVEEFLQTHNNLMPVVRYSYSEIKKMTSGFKEKLGEGGFGCVYKGKLRSGHSAAIKLLGKSKANGQDFINEVATI GRIHHTNVVQLVGFYAEGSKRALVYDFMPNGSLNNFIFFQESSVSLSWEKLHEISLGVAHDIEYLHRGCEMQILHFDIKPHNILLDENFAPKVSDFGLAR LCPTNESLKSLTAARGTIGYMAPELFYQNIGRVSYKADVYSFGMLLLEMAGRRKNWNALTENSNQIYWPDWVHDQVSNEKAIEIGDGGTEEEEKIVKKMI ITGLWCIQMNPLNRPAMNEVVEMLEGDMESLQLPPRPVLYPDEKPMNTCGESSSMSYYFSESLSLIENAYN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38260			Protein kinase superfamily pro...		Potri.007G125800 [exp]	0	1
AT1G66920			Protein kinase superfamily pro...		Potri.007G125900 [exp]	1.00	0.9839
AT4G24000		ATCSLG2	ARABIDOPSIS THALIANA CELLULOSE...		Potri.010G074800 [exp]	1.41	0.9722
AT5G65380			MATE efflux family protein (.1...		Potri.007G010200 [exp]	2.23	0.9669
AT4G22240			Plastid-lipid associated prote...		Potri.004G003200 [exp]	3.00	0.9686	Pt-CHRC.3
AT1G17170		ATGSTU24	Arabidopsis thaliana Glutathio...		Potri.011G140750 [exp]	4.58	0.9586
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Potri.004G176750 [exp]	4.89	0.9677
AT2G36950			Heavy metal transport/detoxifi...		Potri.016G093100 [exp]	6.16	0.9415
AT2G32540		ATCSLB4, ATCSLB...	CELLULOSE SYNTHASE LIKE B4, ce...		Potri.002G227300 [exp]	7.34	0.9656	ATCSLB05.1
					Potri.005G205000 [exp]	7.61	0.9327
AT3G11420			Protein of unknown function (D...		Potri.010G199900 [exp]	10.81	0.9494

Compare expression of checked genes

Potri.007G125800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.