Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70250 291 / 2e-87 receptor serine/threonine kinase, putative (.1) AT5G38260 283 / 4e-86 Protein kinase superfamily protein (.1) AT1G66910 283 / 7e-86 Protein kinase superfamily protein (.1) AT5G38280 283 / 1e-85 PR5K PR5-like receptor kinase (.1) AT1G66980 291 / 2e-85 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT4G18250 285 / 6e-85 receptor serine/threonine kinase, putative (.1) AT1G66920 274 / 8e-83 Protein kinase superfamily protein (.1.2) AT1G67000 277 / 9e-82 Protein kinase superfamily protein (.1) AT5G39030 275 / 1e-81 Protein kinase superfamily protein (.1) AT5G39020 274 / 4e-81 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G125000 [exp] 979 / 0 AT5G38260 318 / 7e-100 Protein kinase superfamily protein (.1) Potri.007G125800 [exp] 959 / 0 AT5G38260 308 / 1e-95 Protein kinase superfamily protein (.1) Potri.007G125450 [exp] 945 / 0 AT5G38260 300 / 2e-92 Protein kinase superfamily protein (.1) Potri.007G125200 [exp] 814 / 0 AT5G38260 300 / 2e-94 Protein kinase superfamily protein (.1) Potri.015G018600 [exp] 610 / 0 AT1G66920 351 / 9e-113 Protein kinase superfamily protein (.1.2) Potri.017G009100 [exp] 566 / 0 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1) Potri.017G009400 [exp] 556 / 0 AT5G38280 329 / 4e-103 PR5-like receptor kinase (.1) Potri.017G007900 [exp] 555 / 0 AT5G38260 324 / 1e-101 Protein kinase superfamily protein (.1) Potri.017G008800 [exp] 542 / 0 AT5G38280 330 / 1e-103 PR5-like receptor kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025492 [exp] 563 / 0 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10014924 [exp] 548 / 0 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10008362 [exp] 466 / 9e-158 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10025554 [exp] 433 / 9e-146 AT5G38260 220 / 2e-64 Protein kinase superfamily protein (.1) Lus10025545 [exp] 361 / 1e-119 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10022359 [exp] 367 / 9e-119 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10008335 [exp] 367 / 7e-117 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10027085 [exp] 308 / 4e-100 AT1G66980 275 / 1e-84 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10027006 [exp] 305 / 4e-97 AT1G66980 218 / 1e-66 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025553 [exp] 309 / 1e-95 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.007G126100.1 pacid=42766759 polypeptide=Potri.007G126100.1.p locus=Potri.007G126100 ID=Potri.007G126100.1.v4.1 annot-version=v4.1 ATGCACTACACTCTTTCTCCACCCATGTCTAGGCTCCTCTTTGCTGGCTACCTTGCCTTACTGCTCCCCCTGCTAGTCCTCCAAACCTGCAACTGCAAGG ATACGACTCTCTGTGCCCCTTCTTCATGTGGCAACCATACTATTAGCTACCCCTTTAGCCTAAACAGTGATCCATCTAACTGTGGAAACCCTCTCTATAC CCTCCACTGCGAGAAAAATACCTCCACTGTATTGTATTTAGACTCACGAAAACACTACGTCCAGGCAATCAACTACAACAACTTGACAATACGATTGGTG GACGCTGGTGTTAAATTAAATGATTGCTCTTCTCTTCCTAGTTTTTCTTTAACATATGCAAACCTGGATAATTCCATGAATCCATATACATCGTTTCAAT ACAAAAAGACATGGCCGAAATGGGATACCAATTTCAAGCGTCTCTCATTATCGCAGAAGATTATTTTTATAAACTGTGCAAATCCAGTGAATTCTCCTCT GTACGTAGATACCGGTACTTGCCTTAATGGAGCAGAATCTTCCAATGGTTCTCTCTCAACGCATTCATATGTGAATATTGGTGGCATGAAGGCCTCGGAT TTGATGGAACTGTGCAGCTTAGAGAGGATGACGTTGTTGCCAGCCAAGGATTACAAGAATACATCCTTTAAGGAAATTCACAGTCAGCTGGCATATGGGT TTGAGCTTTCATGGCACAAGAGCAAGTGTGGAAGCTGTGCAACTATTTGCTACATCGATGATTCGAACCAGACAAAATGCGCAGGTGGGCAATTTTCAGT AGCCTATTGTACTCAATCAAGCTATCATAGGCTGCAGATGGTCATATCATATATATATATAGATAATTTTGCTAAGTCATTCATTTGTTTCTTCTCAATT TCTGTCATCTTGAGGTTCTTGGTTCTGGACAACCCCGTCCTGCTGTATGCATCCATTTTCATTTGGACAAAATTTATTTTTGGGAGTCCGTTTGTGTTTG CATTCTTGATCTATAAATGGCGACGAAGACATCTATCAGCATATGACACAGTTGAGAAATTCCTACACACTCATAACAATCTTATGCCAGTCGTGAGGTA TTCTTATTCGGAGATTAAGAAGATGACCAGAGGTTTCAAGGAAAAGTTGGGTGAAGGAGGTTTTGGATGCGTGTATAAAGGAAAGCTTCGCAGTGGACAT TCTGCAGCGATAAAATTGCTGGGAAAATCCAAGGCTAATGGACAAGATTTCATCAATGAAGTCGCTACCATTGGAAGAATTCATCACACTAATGTAGTGC AACTAGTTGGTTTTTGTGCTGAGGGATCAAAACGCGCTCTTGTATATGATTTCATGCCCAATGGATCTCTTAATAATTTCATTTTTTCTCAAGAAAGATC TGTCTCTTTAAGCTGGGAAAAATTGCATGAGATTTCCCTTGGAGTGGCTCATGGCATCCAATATCTACATCGAGGTTGTGAGATGCAGATCCTACATTTT GACATCAAGCCTCACAACATTCTACTCGATGAAAACTTCGCTCCAAAAGTTTCTGACTTTGGGCTTGCTAGGTTGTGCCCAGCAAATGAGACTCTTAAAT CTCTCACTGCAGCGGGGGGAACGATAGGCTACATGGCGCCAGAACTGTTCTACAAGAACATCGGGCGCGTGTCATACAAAGCTGATGTTTATAGCTTTGG AATGTTGCTGTTGGAAATGACAGGCAGAAGAAAAAATTTGAATCCATTGGCTGAAAGGTTGAGCGAAATTTACTGGCCAGATTGGGTTCATGACCAAGTC TCTAATGAGAAGGCTATAGATATTGGAGATGGTGGCACAGAAGAAGAACAAAAGATAGTCAAGAAGATGGTTATTGCAGGGTTGTGGTTTGTGGAGATAC TTGAAGGAGACATGGAAAGCCTGCAACTGCCTCCGAAACCTATTCTAAATCTAGATGAGAAACCAATGAACACTTGTGGAGAATCATCTTCCATGTCTGA TTATTCTTTGGAATCACTCAGCTTGATTGAAAATGCATTTAATTAA
AA sequence Show only first row Show all	>Potri.007G126100.1 pacid=42766759 polypeptide=Potri.007G126100.1.p locus=Potri.007G126100 ID=Potri.007G126100.1.v4.1 annot-version=v4.1 MHYTLSPPMSRLLFAGYLALLLPLLVLQTCNCKDTTLCAPSSCGNHTISYPFSLNSDPSNCGNPLYTLHCEKNTSTVLYLDSRKHYVQAINYNNLTIRLV DAGVKLNDCSSLPSFSLTYANLDNSMNPYTSFQYKKTWPKWDTNFKRLSLSQKIIFINCANPVNSPLYVDTGTCLNGAESSNGSLSTHSYVNIGGMKASD LMELCSLERMTLLPAKDYKNTSFKEIHSQLAYGFELSWHKSKCGSCATICYIDDSNQTKCAGGQFSVAYCTQSSYHRLQMVISYIYIDNFAKSFICFFSI SVILRFLVLDNPVLLYASIFIWTKFIFGSPFVFAFLIYKWRRRHLSAYDTVEKFLHTHNNLMPVVRYSYSEIKKMTRGFKEKLGEGGFGCVYKGKLRSGH SAAIKLLGKSKANGQDFINEVATIGRIHHTNVVQLVGFCAEGSKRALVYDFMPNGSLNNFIFSQERSVSLSWEKLHEISLGVAHGIQYLHRGCEMQILHF DIKPHNILLDENFAPKVSDFGLARLCPANETLKSLTAAGGTIGYMAPELFYKNIGRVSYKADVYSFGMLLLEMTGRRKNLNPLAERLSEIYWPDWVHDQV SNEKAIDIGDGGTEEEQKIVKKMVIAGLWFVEILEGDMESLQLPPKPILNLDEKPMNTCGESSSMSDYSLESLSLIENAFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70250			receptor serine/threonine kina...		Potri.007G126100 [exp]	0	1
AT5G38260			Protein kinase superfamily pro...		Potri.007G125000 [exp]	5.09	0.7930
AT1G69640		SBH1	sphingoid base hydroxylase 1 (...		Potri.002G061400 [exp]	23.40	0.8393
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Potri.017G086200 [exp]	40.32	0.8205	NAC028
AT2G18600			Ubiquitin-conjugating enzyme f...		Potri.014G041466 [exp]	41.49	0.7280
AT1G05340			unknown protein		Potri.016G019201 [exp]	62.20	0.8018
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.012G055500 [exp]	68.58	0.7802
AT1G79270		ECT8	evolutionarily conserved C-ter...		Potri.008G080800 [exp]	79.13	0.7912
AT1G28200		FIP1	FH interacting protein 1 (.1)		Potri.002G102800 [exp]	92.44	0.7902	Pt-FIP1.3
AT3G02700			NC domain-containing protein-r...		Potri.017G142300 [exp]	100.62	0.7560
AT2G16900			Arabidopsis phospholipase-like...		Potri.009G136400 [exp]	152.14	0.7682

Compare expression of checked genes

Potri.007G126100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.