Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66920 334 / 2e-107 Protein kinase superfamily protein (.1.2) AT1G70250 336 / 2e-106 receptor serine/threonine kinase, putative (.1) AT5G38280 326 / 6e-104 PR5K PR5-like receptor kinase (.1) AT4G18250 330 / 1e-103 receptor serine/threonine kinase, putative (.1) AT1G66910 325 / 1e-103 Protein kinase superfamily protein (.1) AT5G38260 322 / 2e-102 Protein kinase superfamily protein (.1) AT1G67000 327 / 8e-102 Protein kinase superfamily protein (.1) AT5G39020 316 / 1e-98 Malectin/receptor-like protein kinase family protein (.1) AT1G66980 320 / 5e-98 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT1G66930 311 / 5e-98 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G125600 [exp] 1021 / 0 AT5G38260 357 / 3e-115 Protein kinase superfamily protein (.1) Potri.007G125100 [exp] 859 / 0 AT1G66920 347 / 2e-113 Protein kinase superfamily protein (.1.2) Potri.017G035500 [exp] 719 / 0 AT1G66920 336 / 2e-107 Protein kinase superfamily protein (.1.2) Potri.015G018200 [exp] 655 / 0 AT1G66920 368 / 1e-119 Protein kinase superfamily protein (.1.2) Potri.007G125900 [exp] 644 / 0 AT1G66920 0 / 1 Protein kinase superfamily protein (.1.2) Potri.012G003500 [exp] 636 / 0 AT1G66920 358 / 4e-116 Protein kinase superfamily protein (.1.2) Potri.012G003000 [exp] 632 / 0 AT1G66920 356 / 5e-115 Protein kinase superfamily protein (.1.2) Potri.015G018000 [exp] 620 / 0 AT1G66920 355 / 2e-114 Protein kinase superfamily protein (.1.2) Potri.012G002800 [exp] 609 / 0 AT1G66920 346 / 2e-111 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025553 [exp] 586 / 0 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1) Lus10014923 [exp] 540 / 0 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1) Lus10025547 [exp] 535 / 0 AT1G66920 345 / 2e-111 Protein kinase superfamily protein (.1.2) Lus10026761 [exp] 502 / 3e-174 AT1G67000 334 / 4e-107 Protein kinase superfamily protein (.1) Lus10014924 [exp] 353 / 1e-114 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10022359 [exp] 330 / 2e-106 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025545 [exp] 315 / 7e-104 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10025492 [exp] 322 / 3e-102 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10008335 [exp] 323 / 4e-102 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10027085 [exp] 265 / 9e-85 AT1G66980 275 / 1e-84 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.007G126200.2 pacid=42765167 polypeptide=Potri.007G126200.2.p locus=Potri.007G126200 ID=Potri.007G126200.2.v4.1 annot-version=v4.1 ATGGGCGACATAGTGCTTGAGCTGCCAGATGCAGTGAAACTCTACATAGCAAAGATCGACTACAAAAGTCAAGTTATTCATGCAACAGATCCCCAAGGTT GCCTTCGAAGCCACCACTCAAACTTCTATTCGTCCGGGTTTCACATACAGTTTAAGATGTCCAAGGACAATTTTACCATCTTCAATTGCTCTTTAAATAA TGCAATATCTCGGCCTAGGATCGCTTGTCTCAGCACTCACCAATATGACGTTCTTGCCGTTGATTCGGAACAATCTATTGATGACAATGAGTTATTATTA TCTTGTACCAAGATGTACGACCTACCTTATCAACGTGATATCCGCCTGTCTTGGTCCAATCCCAATGGTGTAAATTGTGAAGAAACTGGAAAACAATGTG GATTGAGGATAAATAGCAGCTCTGAGCTTGAAACTGAATGCTATGGCTTGCCCAGGCCAAAAAAAGGTGCACGGAAAAGGAATCTGACTATAGGTGTAAC CACAGGATCCATCCTTTTCGGGGTTGTGGTCATTGCAGTCTACCAAATCTATAACTTTAGAAAATCAGAAGAAGAATATCAGGCAAAGGTTGAAAGGTTT TTGGATGATTACAGAGCTATGAACCCCACAAGATACTCCCATGCTGATCTCAAAAAGATGACAAATCAATTCAGGGATGAATTGGGGCAAGGAGCTTATG GAACTGTGTTCAAAGGAAAGCTAACCAGTGAGATTCCGGTGGCTGTTAAGGTTCTAACCAATTCATCAGAAAAAGGAGAGGAATTCGTCAACGAGATGGG AACAATGGCTAGGATTCACCATGTCAATGTAGTCCGCTTGATTGGCTTCTGTGCTGATGGATTTAGACGAGCTCTGGTTTACGAGTACTTGCCACAAGAT TCGCTGCAGAGGTTCATATCTTCAGCAAACGCCAAGAATGTTTTCCTTGGCTGGGAAAGGCTGCATCATATTGCCCTCGGAGTAGCCAAAGGGATTGAAT ATCTTCACCAGGGTTGTGACCAAACAATCCTCCACTTTGATATCAAACCACATAATATCCTGCTGGACAATGACTTCAATCCTAAGATTGCAGATTTCGG TCTGGCTAAGCTGTGTTCCAAGTATAAAAGTGCTATTTCCATGACAACAGCTAGGGGAACGGTCGGCTACATAGCACCTGAAGTGTTCTCAAGAAACTTT GGGAATGTCTCCTACAAGTCAGACGTGTACTGTTTTGGAATGTTAGTGTTAGAAATGGTTGGTGGAAGGAAAAATGTTGACGATACAGCAGAAAACGGTG ATCAAGTATACTTCCCAGAATGGATTTATAATCTCTTAGAAGAAGGAGAAGACCTGCGGTTCCAAATCGAGGAAGAAGGGGATGCTGAAATAGCGAAGAA GCTAGCCATTGTGGGACTGTGGTGCATCCAGTGGAACCCAGTGGACCGTCCTTCCATGAAAATTGTTGTCCAGATGCTGGAAGGTGAAGGAGACAACTTG ACAAAACCTCCTAATCCTTTACGCTCCTCAGCTCCAAAGAGAAAGACTGCAAGTATAGCAGGGCGACGTCTACATCAAGAATTGGCAGCCATCTCAGAAA CAGAGTAA
AA sequence Show only first row Show all	>Potri.007G126200.2 pacid=42765167 polypeptide=Potri.007G126200.2.p locus=Potri.007G126200 ID=Potri.007G126200.2.v4.1 annot-version=v4.1 MGDIVLELPDAVKLYIAKIDYKSQVIHATDPQGCLRSHHSNFYSSGFHIQFKMSKDNFTIFNCSLNNAISRPRIACLSTHQYDVLAVDSEQSIDDNELLL SCTKMYDLPYQRDIRLSWSNPNGVNCEETGKQCGLRINSSSELETECYGLPRPKKGARKRNLTIGVTTGSILFGVVVIAVYQIYNFRKSEEEYQAKVERF LDDYRAMNPTRYSHADLKKMTNQFRDELGQGAYGTVFKGKLTSEIPVAVKVLTNSSEKGEEFVNEMGTMARIHHVNVVRLIGFCADGFRRALVYEYLPQD SLQRFISSANAKNVFLGWERLHHIALGVAKGIEYLHQGCDQTILHFDIKPHNILLDNDFNPKIADFGLAKLCSKYKSAISMTTARGTVGYIAPEVFSRNF GNVSYKSDVYCFGMLVLEMVGGRKNVDDTAENGDQVYFPEWIYNLLEEGEDLRFQIEEEGDAEIAKKLAIVGLWCIQWNPVDRPSMKIVVQMLEGEGDNL TKPPNPLRSSAPKRKTASIAGRRLHQELAAISETE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66920			Protein kinase superfamily pro...		Potri.007G126200 [exp]	0	1
AT1G66920			Protein kinase superfamily pro...		Potri.007G125100 [exp]	1.00	0.8656
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Potri.012G124600 [exp]	4.69	0.8029
AT5G02570			Histone superfamily protein (....		Potri.009G028001 [exp]	10.09	0.7281
AT5G65890		ACR1	ACT domain repeat 1 (.1.2)		Potri.007G006500 [exp]	10.39	0.7530
AT1G09700		DRB1, HYL1	HYPONASTIC LEAVES 1, DSRNA-BIN...		Potri.002G111400 [exp]	19.89	0.7254
AT3G11470			4'-phosphopantetheinyl transfe...		Potri.006G211300 [exp]	28.49	0.7818
					Potri.003G011000 [exp]	28.63	0.7035
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Potri.001G197300 [exp]	31.84	0.6756	Pt-ATB.1
AT1G09840		AtHIR1, ATSK41	hypersensitive induced reactio...		Potri.004G225700 [exp]	36.78	0.6866	ASK4.1
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Potri.001G401100 [exp]	39.79	0.7729

Compare expression of checked genes

Potri.007G126200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.