Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	BIO2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43360 609 / 0 BIOB, BIO2 BIOTIN AUXOTROPH B, BIOTIN AUXOTROPH 2, Radical SAM superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G033300 [exp] 648 / 0 AT2G43360 606 / 0.0 BIOTIN AUXOTROPH B, BIOTIN AUXOTROPH 2, Radical SAM superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027018 [exp] 598 / 0 AT2G43360 620 / 0.0 BIOTIN AUXOTROPH B, BIOTIN AUXOTROPH 2, Radical SAM superfamily protein (.1) Lus10025559 [exp] 593 / 0 AT2G43360 624 / 0.0 BIOTIN AUXOTROPH B, BIOTIN AUXOTROPH 2, Radical SAM superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF04055 [poplar] [flax] Radical_SAM Radical SAM superfamily CL0036 [poplar] [flax] PF06968 [poplar] [flax] BATS Biotin and Thiamin Synthesis associated domain
Representative CDS sequence Show only first row Show all	>Potri.007G126400.1 pacid=42765187 polypeptide=Potri.007G126400.1.p locus=Potri.007G126400 ID=Potri.007G126400.1.v4.1 annot-version=v4.1 ATGCTGTCAATTAGATCAACCTTTAGATCACAACTAAGACTGAGTTCTGTCACTCTCTCCTCGTTATGTTATTCATCGTCATCAGCTGCAGCAATTCAAG CGGAAAAAACTATCAAAGATGGTCCCAGGAATGATTGGACACGTCAAGAAATCAAGGAAGTTTATGACTCTCCTCTTCTTGATCTCCTCTTTCATGGGGC TCAAGTTCATAGATATGCTCATAATTTTAGAGAAGTTCAGCAATGTACTTTGCTTTCTATAAAGACTGGTGGGTGTAGTGAGGATTGTTCTTATTGTCCT CAATCTTCAAGGTATAATACTGGACTCAAGGCTCAGAGGCTCATGACTAAAGAAACTGTTATCGAGGCTGCTAAAAGGGCAAAAGAGGCTGGTAGCACAC GTTTTTGCATGGGTGCTGCTTGGAGAGATACGATAGGAAGGAAGACCAACTTTAACCAGATTTTAGATTATGTGAAAGAAATCAGGGGTATGGGCATGGA GGTTTGCTGTACCTTGGGCATGCTTGAGAAGCAGCAGGCTGCAGAACTGAAGAAGGCTGGTCTTACAGCTTATAACCATAATCTTGATACCTCAAGAGAA TATTACCCAAACATCATCACTACAAGATCCTATGACGAACGCTTGGAAACCCTTGAACATGTCCGTGAAGCAGGAATTAGTGTCTGCTCAGGGGGCATAA TAGGGCTTGGAGAAGCAGAGGAAGACCGAGTTGGTTTATTGCATACATTGGCAACCCTCCCTACACACCCAGAGAGTGTTCCAATCAATGCATTGGTTGC AGTGAAAGGCACCCCTCTACAAGAACAAAAGCCAGTTGAAATATGGGAGATGATTAGAATGATTGGCTCTGCACGTATAGTTATGCCAAAAGCAATGGTC AGATTATCAGCTGGGAGAGTGAGTTTCTCAATGGCCGAGCAGGCTCTGTGCTTTCTTGCTGGTGCAAATTCCATCTTCACTGGCGAGAAGCTACTGACAA CCCCCAACAATGATTATGATGCAGATCAACTTATGTTCAAGGTTCTCGGTTTGATTCCAAAAGCACCCAGCTTCTCTGCCGATGAAGAGAAGGCTTGTGC TTGTGAAGCAGAGCGTTGTCAGGAAGCAGTTTCTAGTAGTTCAGGTTGA
AA sequence Show only first row Show all	>Potri.007G126400.1 pacid=42765187 polypeptide=Potri.007G126400.1.p locus=Potri.007G126400 ID=Potri.007G126400.1.v4.1 annot-version=v4.1 MLSIRSTFRSQLRLSSVTLSSLCYSSSSAAAIQAEKTIKDGPRNDWTRQEIKEVYDSPLLDLLFHGAQVHRYAHNFREVQQCTLLSIKTGGCSEDCSYCP QSSRYNTGLKAQRLMTKETVIEAAKRAKEAGSTRFCMGAAWRDTIGRKTNFNQILDYVKEIRGMGMEVCCTLGMLEKQQAAELKKAGLTAYNHNLDTSRE YYPNIITTRSYDERLETLEHVREAGISVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALVAVKGTPLQEQKPVEIWEMIRMIGSARIVMPKAMV RLSAGRVSFSMAEQALCFLAGANSIFTGEKLLTTPNNDYDADQLMFKVLGLIPKAPSFSADEEKACACEAERCQEAVSSSSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Potri.007G126400 [exp]	0	1	BIO2.1
AT5G49900			Beta-glucosidase, GBA2 type fa...		Potri.004G227200 [exp]	3.87	0.7913
AT1G16060	AP2_ERF	ADAP	ARIA-interacting double AP2 do...		Potri.001G041500 [exp]	6.85	0.8045
AT1G47750		PEX11A	peroxin 11A (.1)		Potri.002G134000 [exp]	7.21	0.7814
AT3G43720			Bifunctional inhibitor/lipid-t...		Potri.009G158100 [exp]	8.60	0.7984
AT4G24204			RING/U-box superfamily protein...		Potri.007G050500 [exp]	18.97	0.7656
					Potri.006G166850 [exp]	19.49	0.7145
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Potri.015G148500 [exp]	19.49	0.7770
AT1G17260		AHA10	autoinhibited H\(+\)-ATPase is...		Potri.001G161400 [exp]	30.88	0.7575	AHA10.1
AT1G73660			protein tyrosine kinase family...		Potri.015G040100 [exp]	34.72	0.6939
AT1G01220		AtFKGP	Arabidopsis thaliana L-fucokin...		Potri.014G101400 [exp]	35.09	0.7113

Compare expression of checked genes

Potri.007G126400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.