Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10320 1158 / 0 tRNA synthetase class I (I, L, M and V) family protein (.1) AT5G49030 239 / 4e-67 OVA2 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) AT5G16715 99 / 4e-21 EMB2247 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) AT1G14610 89 / 6e-18 VALRS, TWN2 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) AT3G23145 80 / 2e-17 zinc ion binding;isoleucine-tRNA ligases;ATP binding;aminoacyl-tRNA ligases;nucleotide binding (.1) AT4G04350 68 / 2e-11 EMB2369 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G033200 [exp] 1319 / 0 AT4G10320 1940 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.010G014500 [exp] 236 / 1e-65 AT5G49030 1612 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Potri.017G124500 [exp] 96 / 4e-20 AT5G16715 1627 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.005G087850 [exp] 91 / 2e-18 AT1G14610 1503 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Potri.007G004100 [exp] 91 / 2e-18 AT1G14610 1601 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Potri.004G090732 [exp] 87 / 8e-18 AT5G16715 590 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.011G009600 [exp] 69 / 1e-11 AT4G04350 1443 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024041 [exp] 1169 / 0 AT4G10320 1819 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10041706 [exp] 1160 / 0 AT4G10320 1820 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10025306 [exp] 257 / 3e-79 AT4G10320 249 / 1e-74 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10043413 [exp] 222 / 6e-61 AT5G49030 1570 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Lus10034171 [exp] 213 / 6e-58 AT5G49030 1530 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Lus10009139 [exp] 103 / 2e-22 AT5G16715 1128 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10033331 [exp] 94 / 2e-19 AT1G14610 1580 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Lus10034788 [exp] 93 / 4e-19 AT1G14610 1508 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Lus10028505 [exp] 92 / 6e-19 AT5G16715 1520 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10015552 [exp] 67 / 6e-11 AT4G04350 1412 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF00133 [poplar] [flax] tRNA-synt_1 tRNA synthetases class I (I, L, M and V)
Representative CDS sequence Show only first row Show all	>Potri.007G126501.1 pacid=42765440 polypeptide=Potri.007G126501.1.p locus=Potri.007G126501 ID=Potri.007G126501.1.v4.1 annot-version=v4.1 ATGGAAGAAGTCTGTGAAGGAAAAGACTTTTCCTTTCCATCACAAGAAGAAAATATAATATCTTTCTGGTCAGAAATCAAAGCCTTTGAAACCCAATTGG AACGCACCAAAGACCTCCCTGAATATATTTTCTATGACGGTCCACCGTTCGCCACCGGCTTACCTCACTATGGCCACATTTTAGCTGGTACAATCAAAGA TATTGTGACCAGATATCAGACGATGACTGGGCATCATGTGACACGTCGTTTCGGATGGGATTGTCACGGATTACCAGTTGAAAATGAGATTGATAAGAAA TTAGGGATTAAGAGAAGAGATGAGGTTTTGAAATTGGGGATTGATAAATATAATGAGGAGTGTAGAGGAATTGTTACTAGGTATGTGGAGGAATGGGAGA AAGTTGTTGTTAGAGTTGGGAGATGGATTGATTTTAAGAATGATTATAAGACTATGGACTTGAAGTTTATGGAGAGTGTTTGGTGGGTTTTTGGTAAGTT GTTTGAGAAAGGGCTTGTTTACCAGGGTTTTAAGGTCATGCCGTACAGTACAGGTTGCAAAACTGTGCTGTCAAATTTTGAAGTTCAGCAGAATTATAAG GATGTGCCTGATCCTGAGATAATGGTGTCATTTCCAATTGTTGATGATCTGCACAACGCATCCTTTGTTGCTTGGACAACTACACCATGGACTCTTCCCA GTAATCTTGCCCTTTGTGTTAATGGGAATTTTGACTATATTAAGGTTCGTAACAGGTACACTGGAAAAGTGTATATTGTTGCTGAATGTAGGTTGTCTGC ACTTCCTATTGAGAAGCCAAAATCAACTGCATCTGGATCTGCTGGCGATTCAAAGACTTCAAATTCTAAAATTAAGTGCGGGAAGGCTGAAAACTTAATG GATTCTTATGAATTACTGGAGAAAGTCAAGGGCAATGAGTTGGTGAACAAGAAGTATGAGCCACTATTCAATTACTTCAGCGAGTTCTCGGACACGGCAT TCAGAGTTGTTGCAGATGATTATGTGACTGATGACAGTGGTACTGGTATTGTTCATTGTGCTCCTGCATTTGGTGAAGAGGATTATCGTGTTTGCATTGA AAATAAAATACTCAGTAAGGAGAATTTGATTGTAGCTGTTGATGATGATGGCTGCTTTATTGGAAAAATTACTGATTTCAGTGGGCGCTATGTCAAGGAT GCGGACAAGGATATCATTGAAGCAGTGAAGGCAAAAGGCAGGCTTGTTAAATCTGGGAGCTTTATGCATTCGTATCCCTTCTGTTGGAGATCTGATACGC CTCTCATTTATAGAGCTGTTCCAAGCTGGTTTATTAGAGTGGAAGAATTAAAAGAGCAATTATTAGAAAACAACAAGCAAACATACTGGGTTCCTGATTA CGTAAAGGAGAAACGGTTTCACAATTGGCTTGAAAATGCTAGAGACTGGGCTGTTAGCAGAAGTCGATTTTGGGTCACTCCCCTACCTGTATGGATAAGT GATGATGGTGAAGAAGTAATAGTCATGGATTCTATCGCTAAACTTGAAAAGCTTTCTGGTGTTAAGGTGTTTGATCTGCATCGTCACAATATTGATCACA TCACGATCCCATCCAGTCGTGGTCCTGAATTTGGTGTGCTTCGACGTGTAGAGGATGTTTTTGATTGTTGGTTTGAGAGTGGGTCAATGCCTTATGCTTA TATCCATTACCCGTTTGAGAATGTTGAACTTTTTGAGAAAAATTTTCCTGGGCATTTTGTGGCTGAAGGGCTAGACCAAACTCGTGGATGGTTCTATACT CTCATGGTGTTGTCTACAGCATTATTTGGGAAACCTGCATTTAGGAATCTCATTTGCAATGGACTTGTCCTGGCTGAGGATGGAAAGAAGATGAGTAAAA GTTTGAAAAATTATCCATCTCCAATGGATGTTATTAATGACTATGGAGCTGATGCATTACGATTATACCTTATAAACTCTCCAGTTGTGCGTGCAGAGAC CCTGCGTTTCAAAAAGTCAAAGACGTGTTCCTTCCTTGGTACAATGCTTATCGGTTCCTTGTACAGAATGCAAAGAGGCTCGAGGTTGAAGGGCTTGCAC CATTTACTCCTATTGATTCAGCAACTCTTCAAGATTCATCCAATGTGCTTGATCAGTGGATCAACTCAGCTACTCAGAGTCTTGTTCATTTTGTTCGTCA GGAAATGA
AA sequence Show only first row Show all	>Potri.007G126501.1 pacid=42765440 polypeptide=Potri.007G126501.1.p locus=Potri.007G126501 ID=Potri.007G126501.1.v4.1 annot-version=v4.1 MEEVCEGKDFSFPSQEENIISFWSEIKAFETQLERTKDLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQTMTGHHVTRRFGWDCHGLPVENEIDKK LGIKRRDEVLKLGIDKYNEECRGIVTRYVEEWEKVVVRVGRWIDFKNDYKTMDLKFMESVWWVFGKLFEKGLVYQGFKVMPYSTGCKTVLSNFEVQQNYK DVPDPEIMVSFPIVDDLHNASFVAWTTTPWTLPSNLALCVNGNFDYIKVRNRYTGKVYIVAECRLSALPIEKPKSTASGSAGDSKTSNSKIKCGKAENLM DSYELLEKVKGNELVNKKYEPLFNYFSEFSDTAFRVVADDYVTDDSGTGIVHCAPAFGEEDYRVCIENKILSKENLIVAVDDDGCFIGKITDFSGRYVKD ADKDIIEAVKAKGRLVKSGSFMHSYPFCWRSDTPLIYRAVPSWFIRVEELKEQLLENNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWVTPLPVWIS DDGEEVIVMDSIAKLEKLSGVKVFDLHRHNIDHITIPSSRGPEFGVLRRVEDVFDCWFESGSMPYAYIHYPFENVELFEKNFPGHFVAEGLDQTRGWFYT LMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKSLKNYPSPMDVINDYGADALRLYLINSPVVRAETLRFKKSKTCSFLGTMLIGSLYRMQRGSRLKGLH HLLLLIQQLFKIHPMCLISGSTQLLRVLFILFVRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10320			tRNA synthetase class I (I, L,...		Potri.007G126501 [exp]	0	1
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050240 [exp]	4.69	0.8667
AT3G19610			Plant protein of unknown funct...		Potri.001G294600 [exp]	5.09	0.8377
AT5G60250			zinc finger (C3HC4-type RING f...		Potri.009G150100 [exp]	6.92	0.8389
AT5G24450			Transcription factor IIIC, sub...		Potri.007G145000 [exp]	6.92	0.8484
					Potri.002G146750 [exp]	8.94	0.8511
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Potri.002G221600 [exp]	11.66	0.8534
AT3G51370			Protein phosphatase 2C family ...		Potri.007G061100 [exp]	12.84	0.8394
AT1G32310			unknown protein		Potri.003G095100 [exp]	13.22	0.8150
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Potri.014G134800 [exp]	13.60	0.8123	TIR1.2
AT5G07610			F-box family protein (.1)		Potri.008G016300 [exp]	14.24	0.8432

Compare expression of checked genes

Potri.007G126501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.