Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05870 188 / 5e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) AT2G31560 177 / 2e-56 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) AT2G43340 165 / 7e-52 Protein of unknown function (DUF1685) (.1) AT3G22690 107 / 9e-27 unknown protein AT1G08790 81 / 7e-19 Protein of unknown function (DUF1685) (.1) AT5G28690 79 / 2e-18 Protein of unknown function (DUF1685) (.1) AT3G04700 79 / 3e-18 Protein of unknown function (DUF1685) (.1) AT4G33985 78 / 3e-18 Protein of unknown function (DUF1685) (.1) AT3G04710 79 / 4e-17 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT3G50350 74 / 2e-16 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G032800 [exp] 253 / 3e-86 AT1G05870 190 / 1e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Potri.013G042400 [exp] 99 / 9e-26 AT1G08790 151 / 2e-46 Protein of unknown function (DUF1685) (.1) Potri.005G055100 [exp] 92 / 3e-23 AT1G08790 126 / 1e-36 Protein of unknown function (DUF1685) (.1) Potri.005G138100 [exp] 91 / 5e-23 AT4G33985 139 / 2e-42 Protein of unknown function (DUF1685) (.1) Potri.007G043900 [exp] 87 / 2e-21 AT4G33985 134 / 3e-40 Protein of unknown function (DUF1685) (.1) Potri.009G101300 [exp] 77 / 5e-18 AT4G33985 130 / 2e-39 Protein of unknown function (DUF1685) (.1) Potri.014G111000 [exp] 75 / 5e-16 AT2G46940 148 / 4e-43 unknown protein Potri.002G185700 [exp] 64 / 4e-12 AT2G46940 111 / 4e-29 unknown protein Potri.004G059900 [exp] 53 / 1e-08 AT2G42760 99 / 6e-25 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025562 [exp] 190 / 3e-61 AT1G05870 183 / 1e-58 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Lus10027022 [exp] 187 / 5e-60 AT2G31560 183 / 1e-58 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) Lus10042536 [exp] 95 / 5e-25 AT1G08790 141 / 2e-43 Protein of unknown function (DUF1685) (.1) Lus10021997 [exp] 94 / 6e-25 AT1G08790 129 / 4e-39 Protein of unknown function (DUF1685) (.1) Lus10006560 [exp] 95 / 2e-24 AT1G08790 166 / 2e-52 Protein of unknown function (DUF1685) (.1) Lus10019852 [exp] 72 / 4e-16 AT4G33985 149 / 9e-47 Protein of unknown function (DUF1685) (.1) Lus10014064 [exp] 72 / 6e-16 AT4G33985 145 / 2e-45 Protein of unknown function (DUF1685) (.1) Lus10002400 [exp] 68 / 3e-14 AT4G33985 150 / 7e-47 Protein of unknown function (DUF1685) (.1) Lus10038023 [exp] 68 / 2e-13 AT2G46940 162 / 4e-49 unknown protein Lus10027898 [exp] 61 / 9e-12 AT4G33985 141 / 2e-43 Protein of unknown function (DUF1685) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07939 [poplar] [flax] DUF1685 Protein of unknown function (DUF1685)
Representative CDS sequence Show only first row Show all	>Potri.007G126700.1 pacid=42766166 polypeptide=Potri.007G126700.1.p locus=Potri.007G126700 ID=Potri.007G126700.1.v4.1 annot-version=v4.1 ATGGGAGCCATCTCTTGTGAACGAGAATCTTGGGTTTCTTCAAGTAACCTAGTAGAAGTTAAAGAAAATCAAGAAAATGATCAAACCCACAACGTAGATT TTCTTGCTGATGATGTTTTAGAGACTGAACAAGTGTGGCAATACATGCACCAAAATAACACCTTTACCAAAAGCATCAACAAGGGTTCTCTTCAAAAGAT CCAGAGAAAGAAGAGTCAAGTGTTGTTAGAAGGGTATGTGGAAGGAAGTAGTAGCGGTAGTGAAGATGAGTTGAAGAGGACAAAGAGCTTGACAGATGAT GATCTTGATGAGTTAAAAGGGTGCTTGGATCTTGGGTTTGGTTTCAGTTATGATGAGATCCCTGAACTTTGCAATACTTTGCCAGCTCTTGAGCTTTGTT ACTCAATGAGTCAGAAATTTCTTGATGAGCATCAGAAGTCTCCTGAGGGAAGTTCCCCTGCCGTGGCTGAGGCTGCAAATTCTAGTCCTATTGCTAATTG GAAGATCTCTAGTCCTGGTGACCACCCTGAAGATGTTAAAGCAAGACTCAAATATTGGGCACAGGCTGTGGCATGTACTGTTAGGCTATGCAGCTGA
AA sequence Show only first row Show all	>Potri.007G126700.1 pacid=42766166 polypeptide=Potri.007G126700.1.p locus=Potri.007G126700 ID=Potri.007G126700.1.v4.1 annot-version=v4.1 MGAISCERESWVSSSNLVEVKENQENDQTHNVDFLADDVLETEQVWQYMHQNNTFTKSINKGSLQKIQRKKSQVLLEGYVEGSSSGSEDELKRTKSLTDD DLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDEHQKSPEGSSPAVAEAANSSPIANWKISSPGDHPEDVKARLKYWAQAVACTVRLCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05870			Protein of unknown function (D...		Potri.007G126700 [exp]	0	1
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093833 [exp]	6.00	0.7595
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025650 [exp]	7.21	0.7670
AT1G07150		MAPKKK13	mitogen-activated protein kina...		Potri.009G073200 [exp]	10.00	0.7501
AT1G58200		MSL3	MSCS-like 3 (.1.2)		Potri.002G105900 [exp]	12.48	0.7659
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Potri.005G207300 [exp]	14.96	0.6936
AT2G37860		LCD1	LOWER CELL DENSITY 1, Protein ...		Potri.016G103100 [exp]	15.74	0.7547
AT3G48140			B12D protein (.1)		Potri.008G179401 [exp]	16.52	0.7128
AT5G62150			peptidoglycan-binding LysM dom...		Potri.002G152600 [exp]	18.00	0.7403
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024800 [exp]	22.84	0.7222
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G014700 [exp]	23.49	0.7001

Compare expression of checked genes

Potri.007G126700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.