Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31480 86 / 4e-18 unknown protein AT1G05894 84 / 2e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027034 [exp] 48 / 1e-05 ND 39 / 0.005 Lus10025573 [exp] 46 / 5e-05 AT3G20930 336 / 3e-109 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G127200.1 pacid=42766628 polypeptide=Potri.007G127200.1.p locus=Potri.007G127200 ID=Potri.007G127200.1.v4.1 annot-version=v4.1 ATGGGTCCTATCTGTAAGGCAAGAAAGAAGACTGCAGAAGTTATAGAGTTAGTGGAAGAGGAGGAGATTGATCTTGATGAGCAGTTCGGTAAGGAAAGAT GCTCTGATGATCAGTGTATGTGGTTGACTTCAGATAGTTCATCTCCTGCATATTTTTTTGAAGAGTATAGATTGTCTTCTTCATTACATGTTTCTGTTGA TGAATGGATGATCTCATGGCTATCAACATTGGCAAACTCTAATGTCCATTTAGATAAAGCAAGTTCTATCTCTGACAAGTCTAGAGAACTGAATCCTGAT CAGGAGGATGCATCTTCGGAGAGAACTGAGCCGGACTTTGAAATGATTTTGCAGGAGGATTTGAAGGAAGAAAAGCGACTTAGTTTGGTATCGAAATCAT GTAGGAGGAAAATAGAGTTCTCCGTGAGTAGTTCTGAGAGTTCCAGCTCAAATTTTGAGCACTGCTGTGGGAACTTAACAAGCTCTGACGACTCAGCTGC GCCTCCTAGCAGCACCACCTTTGATTCTCCTTCTTGTTCTTCTCGCACGTCGGATTTGGACGGGATGAGTTTTTCAGTCTCTTTACTAAGTCTTGATGGT GATGATTCCAAGTGGACTTCGGATACGGAGTTGGAGTCGGACATTTTAAGGTCTAGTTTTCCTAGTCCATCCTGCTGGAGAAGTTGGAGTTCTGAGGCTT TCTCATCTAGTTCTAATGTTTCTACTCCTGGCAAATTCCAGGACGGACATTTGCACCGTGATTTATCCCTGGAGAATAGTTCTTCAGAAGCTGAAGTTTT GAAAGATTTCAATACAGACGGTCCTCTTTTCTGGCCATTTGATAAGAAACTGGATTGGAATTCTGAGGAAGATTGGAAATGTTTTGCCATGTCTCCTCGT AAGGACAAGCTATCGATTTCTCCTCAGAGGATCTCTTCCAAATCTGTTGAAATGAAATTCCATGACAGTAGAGTGGACTCAAAAATGGTGTGTAGGAGAA GACTTGTCTTCAGCTCAGGTTCGGCAGCATCAAATATTATGGAGAAGAAACAAAGAAGGGACAATAATAGCAGTACCAAGAAGATGAACTCCATGCCATC AAGGCTGAAGAAGTCTGTCAAAGATGGAAGAATTCCTACCCCAAAAGTGGATTCTGGGAATACAAATCTCTCGCAAGATGATTTTGCATCAAATAGGAAA CTTCCAATTGAGATACTATTGGGCCTCGATGAGTTCGATGGACATGAGGGAGTTGATTCAGAATTCAATGAAGGTGTTTTCTCACTAGATGACTCTCTCT AG
AA sequence Show only first row Show all	>Potri.007G127200.1 pacid=42766628 polypeptide=Potri.007G127200.1.p locus=Potri.007G127200 ID=Potri.007G127200.1.v4.1 annot-version=v4.1 MGPICKARKKTAEVIELVEEEEIDLDEQFGKERCSDDQCMWLTSDSSSPAYFFEEYRLSSSLHVSVDEWMISWLSTLANSNVHLDKASSISDKSRELNPD QEDASSERTEPDFEMILQEDLKEEKRLSLVSKSCRRKIEFSVSSSESSSSNFEHCCGNLTSSDDSAAPPSSTTFDSPSCSSRTSDLDGMSFSVSLLSLDG DDSKWTSDTELESDILRSSFPSPSCWRSWSSEAFSSSSNVSTPGKFQDGHLHRDLSLENSSSEAEVLKDFNTDGPLFWPFDKKLDWNSEEDWKCFAMSPR KDKLSISPQRISSKSVEMKFHDSRVDSKMVCRRRLVFSSGSAASNIMEKKQRRDNNSSTKKMNSMPSRLKKSVKDGRIPTPKVDSGNTNLSQDDFASNRK LPIEILLGLDEFDGHEGVDSEFNEGVFSLDDSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31480			unknown protein		Potri.007G127200 [exp]	0	1
					Potri.009G094450 [exp]	17.20	0.5887
AT4G01960			unknown protein		Potri.002G192700 [exp]	19.74	0.6259
AT5G15110			Pectate lyase family protein (...		Potri.008G148800 [exp]	19.79	0.6525
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Potri.007G105200 [exp]	20.49	0.6292
AT3G28050			nodulin MtN21 /EamA-like trans...		Potri.001G032100 [exp]	21.81	0.6730
AT3G06240			F-box family protein (.1)		Potri.008G199601 [exp]	24.31	0.5723
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Potri.007G061540 [exp]	25.05	0.7163
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Potri.007G099000 [exp]	28.19	0.6333
AT3G15910			unknown protein		Potri.011G000700 [exp]	28.61	0.5996
AT5G35770		SAP	STERILE APETALA, Transducin/WD...		Potri.014G166400 [exp]	31.46	0.7140	SAP.1

Compare expression of checked genes

Potri.007G127200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.