Plant FIBer expression Database

Potri.007G127300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G43320 536 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
AT4G14000 186 / 1e-56 Putative methyltransferase family protein (.1)
AT1G73320 41 / 0.0008 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G031700
[exp]
660 / 0 AT2G43320 527 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Potri.001G321100
[exp]
202 / 6e-63 AT4G14000 350 / 8e-122 Putative methyltransferase family protein (.1)
Potri.017G153900
[exp]
41 / 0.0008 AT1G73320 347 / 2e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Potri.001G148200
[exp]
40 / 0.001 AT5G44170 46 / 7e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015953
[exp]
478 / 6e-171 AT2G43320 423 / 2e-149 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Lus10008886
[exp]
135 / 6e-37 AT4G14000 300 / 2e-102 Putative methyltransferase family protein (.1)
Lus10023222
[exp]
131 / 1e-35 AT4G14000 335 / 3e-116 Putative methyltransferase family protein (.1)
PFAM info
Representative CDS sequence
>Potri.007G127300.1 pacid=42765607 polypeptide=Potri.007G127300.1.p locus=Potri.007G127300 ID=Potri.007G127300.1.v4.1 annot-version=v4.1
ATGCGTACCCCATCTTTGTTTGCACAGTGTTTACCTGGTTTGCTACCTCAAGATAGAGGAAACAATAGTGTGTCAACTGTTTTAGAGAGAGATGTGGTTC
TTCCTACACCAGCTGTGGAAATTCTCCCTTCAAAGATGGTTCATCCTTACAAGTATGCTGGAGAGAATGTAGAATTCCAAGGCCTTAATGTGTTCAAGGG
TAGAGTTAGTGTTGCTGATATTATTGCGTTTGTTGGTTCTGAGACGATATCCTCAAAAACTGATGGGTATCTGAAATCTTGGGACAGCTCTATTGATCTT
GTTAATGTTCTCAAGCATGAAATTCGAGATGGACAACTGAGCTTTAGAGGCAAGAGGGTGCTTGAGCTTGGTTGTAGCTATGGTATTCCAGGGATTTTTT
CTTGCCTGAAGGGTGCTTCTACAGTGCACTTCCAAGATCTGAATGCAGAAACTATAAGGTGCACAACCATACCAAATGTTCTTGCTAACCTTGAGCAAGC
TCGGGACAGGCAGAGCCGACAGCCGGAGAGTCCCCTGACTCCATCAAGACAAACATTGGCACCGTCAGTGCACTTCTATGCTGGGGAATGGGAGGAACTC
CCCACAGTCTTATCTGTTGTGAGGAATGATACATTTGAAGTGACCACAGGGATGAGCCTAAGCTTTTCCGAGGAGGATTTCATGGATGGATGTAGTAGCC
TAGATGGTAGCATCATTGGTCAGGAAACTTCCTCAAGACGACGATCAAGGAAGCTTTCAGGAAGCCAAGCATGGGAGAGGGCTAGTGAGACAGATCATGG
AGAAGGGGGATATGATGTTATTCTGATGACAGACATCCCATACTCCATATCTTCTTTGAAGAAGCTGTATGCTCTCATTAAAAAGTGTTTGAGGCCTCCA
TATGGAGTATTATACTTGGCAACAAAGAGAAACTATGTTGGTTTCAATAATGGAGCACGGCAGCTAAGAAGTCTGGTAGACGAGGAAGGCATTTTTGGAG
CCCATTTAGTTAAGGAGATGACTGACAGAGATGTCTGGAAGTTCTTTTTCAAGTGA
AA sequence
>Potri.007G127300.1 pacid=42765607 polypeptide=Potri.007G127300.1.p locus=Potri.007G127300 ID=Potri.007G127300.1.v4.1 annot-version=v4.1
MRTPSLFAQCLPGLLPQDRGNNSVSTVLERDVVLPTPAVEILPSKMVHPYKYAGENVEFQGLNVFKGRVSVADIIAFVGSETISSKTDGYLKSWDSSIDL
VNVLKHEIRDGQLSFRGKRVLELGCSYGIPGIFSCLKGASTVHFQDLNAETIRCTTIPNVLANLEQARDRQSRQPESPLTPSRQTLAPSVHFYAGEWEEL
PTVLSVVRNDTFEVTTGMSLSFSEEDFMDGCSSLDGSIIGQETSSRRRSRKLSGSQAWERASETDHGEGGYDVILMTDIPYSISSLKKLYALIKKCLRPP
YGVLYLATKRNYVGFNNGARQLRSLVDEEGIFGAHLVKEMTDRDVWKFFFK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G43320 S-adenosyl-L-methionine-depend... Potri.007G127300
[exp]
0 1
AT4G39250 MYB RSM2, ATRL1 RADIALIS-LIKE SANT/MYB 2, RAD-... Potri.007G025200
[exp]
1.73 0.7978
AT5G20350 TIP1 TIP GROWTH DEFECTIVE 1, Ankyri... Potri.006G061800
[exp]
4.00 0.7723
Potri.007G044750
[exp]
5.29 0.7319
AT3G06500 A/N-InvC alkaline/neutral invertase C, ... Potri.008G101500
[exp]
7.74 0.7573
AT1G71450 AP2_ERF Integrase-type DNA-binding sup... Potri.001G181500
[exp]
8.66 0.7354
AT5G64300 ATGCH, ATRIBA1,... RED FLUORESCENT IN DARKNESS 1,... Potri.001G310500
[exp]
10.09 0.7924
AT5G18150 Methyltransferase-related prot... Potri.019G035000
[exp]
12.24 0.7815
AT1G29690 CAD1 constitutively activated cell ... Potri.011G075500
[exp]
13.07 0.7436
AT3G55430 O-Glycosyl hydrolases family 1... Potri.008G055900
[exp]
13.52 0.7912
AT2G33060 AtRLP27 receptor like protein 27 (.1) Potri.012G026600
[exp]
14.07 0.7412

Potri.007G127300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.