Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	FTA.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59380 433 / 2e-153 FTA, PLP, ATFTA, PFT/PGGT-IALPHA PLURIPETALA, farnesyltransferase A (.1) AT4G24490 82 / 3e-17 ATRGTA1 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) AT5G41820 60 / 9e-10 ATRGTA2 RAB geranylgeranyl transferase alpha subunit 2 (.1) AT1G10095 50 / 1e-06 Protein prenylyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G225100 [exp] 79 / 4e-16 AT4G24490 659 / 0.0 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) Potri.013G047100 [exp] 50 / 8e-07 AT1G10095 430 / 4e-149 Protein prenylyltransferase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000763 [exp] 465 / 7e-165 AT3G59380 421 / 1e-147 PLURIPETALA, farnesyltransferase A (.1) Lus10015954 [exp] 455 / 1e-161 AT3G59380 414 / 1e-145 PLURIPETALA, farnesyltransferase A (.1) Lus10001518 [exp] 89 / 3e-19 AT4G24490 630 / 0.0 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) Lus10031441 [exp] 89 / 3e-19 AT4G24490 667 / 0.0 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) Lus10022404 [exp] 86 / 3e-18 AT4G24490 656 / 0.0 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) Lus10042569 [exp] 52 / 2e-07 AT1G10095 387 / 2e-132 Protein prenylyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01239 [poplar] [flax] PPTA Protein prenyltransferase alpha subunit repeat
Representative CDS sequence Show only first row Show all	>Potri.007G127500.1 pacid=42766293 polypeptide=Potri.007G127500.1.p locus=Potri.007G127500 ID=Potri.007G127500.1.v4.1 annot-version=v4.1 ATGGATGCAGAGGAGCACAAATTGCGGCTCAGCCAGGATCCAGAGTGGGCAGACGTGACACCAATCCCACAAGATGATGGACCAAACCCAGTTGTCCCCA TCGATTACAAGCCAGATTTCATTGAAACCATGGGCTATTTCCGTGCTGTTTACAAAGCTAATGAGTTTTCTCCTCGTGCACTTCAACTCACTCATCAAGC TATTCTTTTGAATCCTGGAAATTACACTGTGTGGCATTTCAGAAGATTGATACTTGATGCATTGGGCATAGACTTGAATGAAGAACTGAATTTTATGTCG GGGATTTCAGAGAGTAACCCCAAAAATTATCAGATATGGCATCATAGGCGGTGGATTGCTGAGAAATTGGGAACTGATGCCGCATCTAAGGAACTTGAGT TTACAAGGAGGATGCTTTCTCTTGATGCCAAAAATTATCATGCCTGGTCTCATAGGCAGTGGGTATTGCAGGCCTTAGGAGGGTGGGAAAATGAACTCGA CTACTGTCATCAGCTGCTTGAAAAAGATGTTTTCAATAATTCTGCTTGGAATCAAAGATATTTTGTGGTAACTAGATCTCCCTTCCTGGGAGGCCTAGAA GCCACAAGAGAGTCAGAAGTAAAGTACACTATTGAGACCATTTTAGGCAACCCTGGGAATGAGAGCCCATGGAGATATCTTCGCGGCCTCTACAAAAATG ACCCCAAGTCTTGGATCAGCGATCCTCAGGTTTCTTCTGTATGTTTGAAGGTTTTGAGTGCTGAAGCCAACCATGTCTTTGCTCTGAGCACACTTTTGGA TCTTCTCTCCCATGGTTTCCAAGCTAACCAAGAGTTTAGAGATGCTGTAGATTCTCTGAGACCTTCAAACTCCGACCCAGCAGATTCTGACATAGCAAAA ACAATTTGTTCTATCTTGCGGCATGTGGACCCAATGAGAGTTAACTACTGGACATGGCGCAAGAGCAAGTTGCCTTCGTCAGTCTCTGTATAG
AA sequence Show only first row Show all	>Potri.007G127500.1 pacid=42766293 polypeptide=Potri.007G127500.1.p locus=Potri.007G127500 ID=Potri.007G127500.1.v4.1 annot-version=v4.1 MDAEEHKLRLSQDPEWADVTPIPQDDGPNPVVPIDYKPDFIETMGYFRAVYKANEFSPRALQLTHQAILLNPGNYTVWHFRRLILDALGIDLNEELNFMS GISESNPKNYQIWHHRRWIAEKLGTDAASKELEFTRRMLSLDAKNYHAWSHRQWVLQALGGWENELDYCHQLLEKDVFNNSAWNQRYFVVTRSPFLGGLE ATRESEVKYTIETILGNPGNESPWRYLRGLYKNDPKSWISDPQVSSVCLKVLSAEANHVFALSTLLDLLSHGFQANQEFRDAVDSLRPSNSDPADSDIAK TICSILRHVDPMRVNYWTWRKSKLPSSVSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59380		FTA, PLP, ATFTA...	PLURIPETALA, farnesyltransfera...		Potri.007G127500 [exp]	0	1	FTA.1
AT5G18200			UTP:galactose-1-phosphate urid...		Potri.019G034400 [exp]	1.00	0.8684
AT3G15352		ATCOX17	ARABIDOPSIS THALIANA CYTOCHROM...		Potri.001G400000 [exp]	1.73	0.8505	ATCOX17.2
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Potri.004G042200 [exp]	2.82	0.8502
AT5G51880			2-oxoglutarate (2OG) and Fe(II...		Potri.015G135300 [exp]	9.16	0.8346
AT1G15270			Translation machinery associat...		Potri.001G181800 [exp]	10.81	0.8251
AT5G12190			RNA-binding (RRM/RBD/RNP motif...		Potri.009G067500 [exp]	11.74	0.8524
AT2G37975			Yos1-like protein (.1)		Potri.016G109500 [exp]	16.73	0.8323
AT4G35220			Cyclase family protein (.1)		Potri.001G301501 [exp]	17.17	0.8411
AT4G03120			C2H2 and C2HC zinc fingers sup...		Potri.003G058400 [exp]	18.33	0.8246
AT4G29260			HAD superfamily, subfamily III...		Potri.006G152900 [exp]	18.43	0.8281

Compare expression of checked genes

Potri.007G127500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.