Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31450 422 / 2e-147 ATNTH1 DNA glycosylase superfamily protein (.1.2) AT1G05900 404 / 3e-140 ATNTH2 endonuclease III 2 (.1.2) AT3G10010 44 / 0.0001 DML2 demeter-like 2 (.1) AT5G04560 44 / 0.0001 DME1, DME DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) AT3G47830 42 / 0.0003 DNA glycosylase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G198000 [exp] 52 / 4e-07 AT4G12740 523 / 0.0 HhH-GPD base excision DNA repair family protein (.1) Potri.001G150001 [exp] 43 / 0.0003 AT5G04560 560 / 2e-171 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025575 [exp] 477 / 1e-168 AT2G31450 424 / 1e-147 DNA glycosylase superfamily protein (.1.2) Lus10027037 [exp] 474 / 9e-168 AT2G31450 416 / 3e-145 DNA glycosylase superfamily protein (.1.2) Lus10000431 [exp] 158 / 3e-47 AT2G31450 146 / 3e-43 DNA glycosylase superfamily protein (.1.2) Lus10001182 [exp] 59 / 4e-09 AT4G12740 464 / 2e-158 HhH-GPD base excision DNA repair family protein (.1) Lus10043074 [exp] 57 / 9e-09 AT4G12740 468 / 7e-161 HhH-GPD base excision DNA repair family protein (.1) Lus10023864 [exp] 44 / 0.0002 AT5G04560 555 / 2e-170 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0198 [poplar] [flax] HHH PF00730 [poplar] [flax] HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Representative CDS sequence Show only first row Show all	>Potri.007G127600.1 pacid=42765244 polypeptide=Potri.007G127600.1.p locus=Potri.007G127600 ID=Potri.007G127600.1.v4.1 annot-version=v4.1 ATGTCTGTGGCTGTCATCAGAGTTCCTTGTTCATTACAAACGACATTCGGGCTCATCGTCAAATGTAAGAAAATGCCAAACACAAGATTCTCCTCTAAAT CCCTCCAATCCAAAACAGAGATTTCCACTTCAGACACAGTCCCAGGTCCCAATGAAGTTTCTGTGCCAGAAGTTCGTGTTTTTGTGAGGAAAAGGAAAGT GAAAACCACTGTTGAGGCTGCTGAAAAGGAGGTTAAAGTAGAGCCCAGGAAGCAGAAATTATCTGCTTTACCTGACATTGAAGAATTTGCATACAAGAAA GGAAATGGTCCTGCCCTGATAAGGAAGTTAAAATCTACCGAAAATGTGCTTCCTGTGGACAGTGAAGCTGCTTCTACTATTAGGCCAGCAGGTGAACCAC CTCTCAACTGGGACAAAGTCCTTGAAGGGATTCACAAAATGAGGTCTTCTGAAGATGCACCAGTAGACACCATGGGATGTGAGAAAGCTGGCATCTCTCT TCCTCCTGGGGAAAGAAGATTTGCGGTCTTGGCATCAGCACTTCTCTCAAGCCAAACAAAGGATCATGTTACTCATGGAGCAATTCAGCGTCTTCAGCAA AACAATCTGCTTACTGCTGATGCCATTGACAAAGCTGATGAAACAGCAATCAAGGACTTGATTTACCCGGTTGGCTTTTATACAAGAAAAGCTAGTAATT TGAAGAAAATTGCAAAAATTTGTCTCTTGAAGTATGACGGCGATATACCTAGTTCTTTGGAGGACTTACTGTCCCTTCCAGGGATTGGACCAAAGATGGC TCATTTGGTAATGAATATTGCTTGGAACAATGTTCAAGGGATTTGTGTAGATACTCATGTGCACCGCATTTGCAACCGCCTTGGATGGGTGGCACGGCCA GGCACAAAACAGAAAACTTCAACTCCTGAGGAAACAAGAGAGGCTTTGCAACTATGGCTTCCAAAGGACGAATGGGTTCCAATAAACCCTCTTTTGGTGG GATTTGGGCAGACAATTTGTACTCCACTTAGACCTAGATGTGGAATGTGCTGCATAAGTGAGTTCTGTCCATCTGCATTCAAGGAGACCTCAAGTCCGGC ATCCAAGCAGAAAAGGTCCGGTGGGAGCAAAAAGCTCTAA
AA sequence Show only first row Show all	>Potri.007G127600.1 pacid=42765244 polypeptide=Potri.007G127600.1.p locus=Potri.007G127600 ID=Potri.007G127600.1.v4.1 annot-version=v4.1 MSVAVIRVPCSLQTTFGLIVKCKKMPNTRFSSKSLQSKTEISTSDTVPGPNEVSVPEVRVFVRKRKVKTTVEAAEKEVKVEPRKQKLSALPDIEEFAYKK GNGPALIRKLKSTENVLPVDSEAASTIRPAGEPPLNWDKVLEGIHKMRSSEDAPVDTMGCEKAGISLPPGERRFAVLASALLSSQTKDHVTHGAIQRLQQ NNLLTADAIDKADETAIKDLIYPVGFYTRKASNLKKIAKICLLKYDGDIPSSLEDLLSLPGIGPKMAHLVMNIAWNNVQGICVDTHVHRICNRLGWVARP GTKQKTSTPEETREALQLWLPKDEWVPINPLLVGFGQTICTPLRPRCGMCCISEFCPSAFKETSSPASKQKRSGGSKKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31450		ATNTH1	DNA glycosylase superfamily pr...		Potri.007G127600 [exp]	0	1
AT3G19220		CYO1 ,SCO2	SNOWY COTYLEDON 2, SHI-YO-U ME...		Potri.009G102400 [exp]	9.43	0.9159
AT2G02590			unknown protein		Potri.010G034400 [exp]	12.96	0.8787
AT2G24020			Uncharacterised BCR, YbaB fami...		Potri.018G105600 [exp]	26.90	0.8940
AT5G42850			Thioredoxin superfamily protei...		Potri.001G225500 [exp]	29.10	0.8504
AT5G48220			Aldolase-type TIM barrel famil...		Potri.014G169100 [exp]	32.77	0.8319
AT1G04640		LIP2	lipoyltransferase 2 (.1.2)		Potri.001G014000 [exp]	42.66	0.8403	LIP2.2
AT2G42770			Peroxisomal membrane 22 kDa (M...		Potri.010G032900 [exp]	45.59	0.8695
AT3G03620			MATE efflux family protein (.1...		Potri.013G069600 [exp]	54.60	0.8713
					Potri.013G069675 [exp]	58.44	0.8540
AT4G33460		ABCI10, ATNAP13...	embryo defective 2751, ATP-bin...		Potri.005G062800 [exp]	61.23	0.8357

Compare expression of checked genes

Potri.007G127600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.