Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05910 1351 / 0 cell division cycle protein 48-related / CDC48-related (.1) AT3G15120 288 / 2e-79 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G03340 231 / 4e-63 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 231 / 6e-63 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT3G53230 228 / 4e-62 ATPase, AAA-type, CDC48 protein (.1) AT5G19990 181 / 2e-49 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 181 / 3e-49 RPT6A AAA-type ATPase family protein (.1) AT2G20140 178 / 5e-48 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT4G29040 178 / 6e-48 RPT2A regulatory particle AAA-ATPase 2A (.1) AT1G53750 177 / 7e-48 RPT1A regulatory particle triple-A 1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G030900 [exp] 1788 / 0 AT1G05910 1494 / 0.0 cell division cycle protein 48-related / CDC48-related (.1) Potri.017G031400 [exp] 515 / 3e-174 AT1G05910 328 / 6e-104 cell division cycle protein 48-related / CDC48-related (.1) Potri.011G141400 [exp] 291 / 2e-80 AT3G15120 1478 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G080600 [exp] 235 / 2e-64 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.012G088200 [exp] 231 / 5e-63 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G125500 [exp] 230 / 6e-63 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.017G108200 [exp] 230 / 7e-63 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.016G091600 [exp] 229 / 1e-62 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.008G144100 [exp] 179 / 1e-48 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025576 [exp] 1493 / 0 AT1G05910 1557 / 0.0 cell division cycle protein 48-related / CDC48-related (.1) Lus10027038 [exp] 1489 / 0 AT1G05910 1546 / 0.0 cell division cycle protein 48-related / CDC48-related (.1) Lus10013677 [exp] 297 / 2e-82 AT3G15120 1474 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017935 [exp] 267 / 1e-72 AT3G15120 1385 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021442 [exp] 232 / 2e-63 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021441 [exp] 232 / 3e-63 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 231 / 6e-63 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10037385 [exp] 230 / 1e-62 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 229 / 2e-62 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10001402 [exp] 192 / 6e-52 AT3G53230 803 / 0.0 ATPase, AAA-type, CDC48 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [poplar] [flax] Bromodomain Bromodomain CL0023 [poplar] [flax] P-loop_NTPase PF01695 [poplar] [flax] IstB_IS21 IstB-like ATP binding protein
Representative CDS sequence Show only first row Show all	>Potri.007G127900.2 pacid=42765884 polypeptide=Potri.007G127900.2.p locus=Potri.007G127900 ID=Potri.007G127900.2.v4.1 annot-version=v4.1 ATGTATTCAAAACGTTCTGGTCAAGGAGATGGCCCAGGTCCAAGGCCTGTACGGACTAGCGATAGGCTTAGGAGAAGGCCGAAAGTGTTTAGCCGGACGT ACTTGTATTATACTCCAGGCATTATTCGGCCCAGGAAAGGCAAAACCAAGACGAGGACTGCAGCTTCTCGGATTGCCAAGATGTTGGGTAACCGGGCAGT GCGGGCTGCAAATGCTAATTCAGTTCCAACCAATCTTCGACGCTCGACAAGAAAGAGGAGGCTTTCTGCTCATCTTGAAGATTACACAGATAGTTCTGGA TCAGAGGATGAAGACTTGATGAGACCTGCATTTCGACCATTGAGGAACCGGATTCATAATAGTGCGAGTCAAGATGAGTTATCATCTTCCAAGCGTAAAA AAAATGTGGAGACAAAATCAACGCCTCGACGCGAAGGACTGCGACCCCGTCGTTCTAGAACAATCATAAAAAAGCCACTGACTCTAGAGTCTGGAGATGA GCAAGATACTTCTGAGGAGAAGGCTGTCCAAGATGAGACTGAAAATGGGAACGATATTGATGATAATGATGCAGATGATGGTCAGAATGATGACGAGGCT GAGGATGAGGGAGATGGGGAGGGTGCAGGTGAGGGTGAGGGTGAGGGTGAGGATGAAGGAGAAGAGGACGACGACGACGACGATGACGATGAAGGTGAAG AGGAGGAAGAAGAGCAGGATGGAAGGAGGAGATATGATCTCCGAAACCGTGCGGAAGTCCGTAGGCTTTCTATGGAGGAAGGTAAGCAAAGACCACGATC TCCTCGAAGGGTATTGCATCAAGGAATGGGGACGAAGGTCAATAGGGATGTAAGGAAAGGGGGATCAAGGGTTCACAAGCGTCATCGTCTATCAAGAGCA GAGGATTCTGATGATTCCCTTCTTGTGGATGAGTTGGACCAAGGTCCTGCTATTCCTTGGGCTCGAGGTGGGAGCAGATCCGGACCACCTTGGCTCCTTG GAGGACTAGAGATGCATGGGACAACAACTTGGGGATTGAATGTTGCTGCATCTGGTTGGGGCCATCAAGGTGATGCTTTAGCGAGCTTGACATCTGGTGT GCAAACTGCTGGCCCTAGCTCAAAAGGAGGGGCAGATATTCAACCTTTACAGGTCGACGAGACTGTAAGTTTTGATGACATAGGCGGGCTTTCAGGATAT ATCGATGCTCTGAAGGAGATGGTTTTCTTTCCCTTGTTATATCCAGATTTCTTTGCCAGCTATCATATTACCCCGCCAAGAGGGGTTTTGTTATGTGGTC CTCCTGGTACTGGGAAAACATTAATTGCCAGGGCATTAGCATGTGCTGCTTCAAAAGCTGGCCAGAAGGTTAGTTTTTACATGCGCAAGGGTGCTGATGT GCTCAGCAAATGGGTCGGTGAGGCTGAAAGGCAATTGAAACTTCTTTTTGAGGAGGCACAAAGGAACCAGCCTTCCATTATCTTCTTTGATGAAATAGAT GGACTTGCTCCTGTTAGATCTAGCAAACAAGAGCAGATTCACAATTCTATTGTGTCTACTTTGCTCGCCTTGATGGATGGCCTGGATTCTCGCGGACAAG TTGTTTTGATTGGAGCAACCAACAGAGTTGATGCCATCGATGGAGCCTTGCGTCGCCCTGGTCGGTTTGATCGAGAATTTAACTTCCCTTTGCCTGGTTG TGAGGCCCGTGCTGAAATATTAGACATTCACACCCGCAAGTGGAAGCATCCTCCTTCAAAGGAGCTGAAGTCAGAACTTGCAGCTAATTGTGTTGGCTAT TGTGGTGCAGATTTAAAGGCACTATGCACTGAAGCTGCCATCCGTGCTTTCCGTGAAAAATACCCTCAAGTTTACACAAGTGATGATAAGTTTGTGATAG ATGTTGATTCTGTAAAGGTTGAGAAGTATCATTTTGTCGAAGCCATGTCCACAATTACCCCTGCAGCTCATAGAGGTGCTGTTGTGCACTCCAGGCCATT GTCTTTAGTAGTTGCACCGTGTCTGCAAAGTCATCTCCAGAAAGCCATGAATTGCCTATCCGATATATTTTCACCCCTTGCAGTGTCATCAGAGTTTATT AAGCTTTCTATGCTTTCCTATGGATCTGCAATTCCTCTTGTGTATAGGCCACGGCTTTTGCTTTGTGGTTGTGAAGGTTCTGGTCTGGATCATCTTGGGC CTGCCGTGTTACATGAACTGGAGAAATTTCCTGTTCATTCTCTAGGACTTCCGTCTCTGCTTTCGGATCCCAGTGCAAAGACCCCAGAGGAAGCTTTGGT GCACATATTTGGTGAAGCACGGAGAGCCACACCATCCATCCTTTACATATCTCACTTTGATCTTTGGTGGGATAATGCACATGAACAGCTCAGGGCTGTT CTTCTGACTTTATTAGAAGAATTGCCGTCTGACTTACCGATTCTATTACTTGGAAGCTCTTCATCTCCACCCGCCGAGATTGATGGCGCATCATCGGTAT TTCCTGATCATTCAGTCTATCAAGTGGGCAAACCATCAACCGGAGACAGATCTTTGTTCTTTGACCGTTTAATTGAAGCTGCCTTATCAGTTGTCCTGGA GGACGTGGCCAAGAAATCCCAAGGATCTTCCCCTCTTCCTGAACTTCCTAAGGCACAAAAAGTGGCAAGTGGCCCAAAGGCATCAGAGTTGAAAGCCAAG ATAGAAGCTGAGCAGCATGCTCTACGCCGAATGCGTATGTGCCTCAGAGATATTTGCAACAGGGTACTTTATGACAAACGATTTAGTGCCTTCCATTATC CTGTCACCGATGAGGATGCTCCAAACTACCGCTCTATAATACAGAACCCTATGGACATGGCTACTATGCTGCAGCGTGTTGACTCTGGTCAATATATCAC CTGCTCAGCATTCCTGCAAGACATTGATCTCATCGTGACCAATGCAAAGGTTTACAATGGAGATGATTATAATGGTGCTAGGATTGTCAGTAGAAGTTAT GAGCTTCGGGATGCAGTGCATGGAATGTTGTCACAGATGGACCCTGCACTCGTCACATACTGTGACAAGATTGCTGCCCAAGGGGGTCCAGTGCAAGTAC CAGATGATTTAGGGGGATCTATTTTTCCATCAACCCCAGTTGTGCAGCTGGGAACAACTAGAACAAGTGCCCGGTTACGTAATGTCCAGCCTGATGTTAA TCTGGATCAAAGCTACGAGGCCTTGAAAAGGCAGAAGAAAAATGCTGATGCTACTCATGCTGCTTCAACAGCAGAAGATAAATCACGACATCAGGATTCT GTACAGGCAAAGCTGCCAGAGGAACATGATGCGGACGATATGAATCCTGACAGACCTGAGTCCTCTTCGGCTGATGACATTCAACATGAAACTTCAGGAG GAGAAGCTTCTGGTCATATCGAAGGGAGCGGGTCCCAAGATGCTACAATGTCCGATGCCGAAGCATCAAGCCACGGAGAGTACATCAAGCGGCTTCTCGT CGAGCGCACTGAAAATTATGACATCCCACAGCTTGAAAGGCTCTACACTCGTATTATGAAAGGCATCTTCGAAACCAAGGACAAAGGCTACGAAGATGGC CCCAGATACTCAATTTTGAGGTTTTTGGTGAAATTTGCAGAGGACGCTGCAAATTTCTGA
AA sequence Show only first row Show all	>Potri.007G127900.2 pacid=42765884 polypeptide=Potri.007G127900.2.p locus=Potri.007G127900 ID=Potri.007G127900.2.v4.1 annot-version=v4.1 MYSKRSGQGDGPGPRPVRTSDRLRRRPKVFSRTYLYYTPGIIRPRKGKTKTRTAASRIAKMLGNRAVRAANANSVPTNLRRSTRKRRLSAHLEDYTDSSG SEDEDLMRPAFRPLRNRIHNSASQDELSSSKRKKNVETKSTPRREGLRPRRSRTIIKKPLTLESGDEQDTSEEKAVQDETENGNDIDDNDADDGQNDDEA EDEGDGEGAGEGEGEGEDEGEEDDDDDDDDEGEEEEEEQDGRRRYDLRNRAEVRRLSMEEGKQRPRSPRRVLHQGMGTKVNRDVRKGGSRVHKRHRLSRA EDSDDSLLVDELDQGPAIPWARGGSRSGPPWLLGGLEMHGTTTWGLNVAASGWGHQGDALASLTSGVQTAGPSSKGGADIQPLQVDETVSFDDIGGLSGY IDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEID GLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKHPPSKELKSELAANCVGY CGADLKALCTEAAIRAFREKYPQVYTSDDKFVIDVDSVKVEKYHFVEAMSTITPAAHRGAVVHSRPLSLVVAPCLQSHLQKAMNCLSDIFSPLAVSSEFI KLSMLSYGSAIPLVYRPRLLLCGCEGSGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRATPSILYISHFDLWWDNAHEQLRAV LLTLLEELPSDLPILLLGSSSSPPAEIDGASSVFPDHSVYQVGKPSTGDRSLFFDRLIEAALSVVLEDVAKKSQGSSPLPELPKAQKVASGPKASELKAK IEAEQHALRRMRMCLRDICNRVLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDMATMLQRVDSGQYITCSAFLQDIDLIVTNAKVYNGDDYNGARIVSRSY ELRDAVHGMLSQMDPALVTYCDKIAAQGGPVQVPDDLGGSIFPSTPVVQLGTTRTSARLRNVQPDVNLDQSYEALKRQKKNADATHAASTAEDKSRHQDS VQAKLPEEHDADDMNPDRPESSSADDIQHETSGGEASGHIEGSGSQDATMSDAEASSHGEYIKRLLVERTENYDIPQLERLYTRIMKGIFETKDKGYEDG PRYSILRFLVKFAEDAANF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05910			cell division cycle protein 48...		Potri.007G127900 [exp]	0	1
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.001G004200 [exp]	3.00	0.9023
AT3G21290			dentin sialophosphoprotein-rel...		Potri.003G033100 [exp]	5.09	0.9012
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Potri.006G280200 [exp]	6.00	0.8903
AT2G36480			ENTH/VHS family protein (.1.2....		Potri.006G115600 [exp]	13.41	0.8692
AT5G22450			unknown protein		Potri.010G238400 [exp]	15.49	0.8665
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Potri.015G147200 [exp]	18.13	0.8629
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Potri.014G083700 [exp]	18.43	0.8585
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.001G123400 [exp]	18.76	0.8623
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Potri.006G208900 [exp]	18.81	0.8635	Pt-SPY.2
AT5G09950			Tetratricopeptide repeat (TPR)...		Potri.013G129500 [exp]	24.37	0.8613

Compare expression of checked genes

Potri.007G127900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.