Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05960 1014 / 0 ARM repeat superfamily protein (.1.2) AT2G41830 773 / 0 Uncharacterized protein (.1) AT5G21080 728 / 0 Uncharacterized protein (.1) AT5G26850 514 / 1e-166 Uncharacterized protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G055100 [exp] 882 / 0 AT2G41830 1184 / 0.0 Uncharacterized protein (.1) Potri.006G052100 [exp] 864 / 0 AT2G41830 1110 / 0.0 Uncharacterized protein (.1) Potri.013G008500 [exp] 547 / 2e-179 AT5G26850 1132 / 0.0 Uncharacterized protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001161 [exp] 1281 / 0 AT1G05960 999 / 0.0 ARM repeat superfamily protein (.1.2) Lus10006583 [exp] 1214 / 0 AT1G05960 960 / 0.0 ARM repeat superfamily protein (.1.2) Lus10026298 [exp] 813 / 0 AT2G41830 1083 / 0.0 Uncharacterized protein (.1) Lus10019717 [exp] 695 / 0 AT2G41830 1012 / 0.0 Uncharacterized protein (.1) Lus10042372 [exp] 635 / 0 AT2G41830 840 / 0.0 Uncharacterized protein (.1) Lus10029842 [exp] 520 / 1e-168 AT5G26850 1115 / 0.0 Uncharacterized protein (.1.2.3.4) Lus10020697 [exp] 511 / 3e-165 AT5G26850 1103 / 0.0 Uncharacterized protein (.1.2.3.4) Lus10016400 [exp] 317 / 1e-92 AT5G21080 538 / 5e-175 Uncharacterized protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G128000.9 pacid=42765398 polypeptide=Potri.007G128000.9.p locus=Potri.007G128000 ID=Potri.007G128000.9.v4.1 annot-version=v4.1 ATGGGGGTTATGTCAAGACGGGTTGTGCCCGCCTGTGGTAGCCTGTGTTTCTTCTGTCCTTCACTGAGGGCAAGGTCAAGACAGCCCGTTAAGCGATACA AGAAGTTGCTTGCTGATATCTTGCCGCGTAATCAGGAGGCTGAACCAAATGATAGGAAAATCGGGAAGCTTTGCGAGTATGCTTCAAAGAACCCATTACG AATTCCCAAGATTACTGATACCCTGGAGCAAAGATTTTACAAGGAGTTGCGGCATGAGAACTTTGGATCTGTAAAGGTTGTGGTGTGCATTTATAGGAAA TTGCTATCGTCATGTAAGGAGCAGATGCCTCTATTTGCCAGTAGTTTGTTGAGCATTGTTCGGACTCTTTTGGAGCAAACTGGGAAGGATGATTTACGGC TTCTGGCTTGCGATGTTCTTGTTGATTTTATAAGTTGCCAGATGGATGGCACATATATGTTCAACTTAGAAGGCCTCATTCCTAAGCTCTGTCAATTAGC ACAAGAAGCTGGAAATAACGAAAGAACTCTACGTTTGCGTTCAGCAGGGCTGCAAGTGCTGGGCTCCATGGTGTGTTTCATGGGTGAGCAAGCTCACATC TCGATGGATTTTGACAGTATTATATCAGTCACTTTGGAGAACTACATTGATTTCCAAATGAATCCAGATACAATGGAAGATCAATGGGTTCAAGGTGTGC TTAAAACAGAAGATAATGGCTCATCTTTCCCAGACATAAGCAAGAAGGTTTCCTTATCAGACCTTACAACCAAGCCTGAATTGGACCTTGCAATGGATAC TTCCAAGAGTCCATCTTACTGGTCTAGGGTATGTTTATGTAACATGGCTAGACTTGCGAAGGAAGCTACAACAATACGACGTGTTCTTGAACCTCTATTC CAGAACTTTGATGCTAACAATCACTGGTCCCTAGAAAAAGGAGTTGCCTATCCTGTTTTGACATTTTTGCAGTCGCTTCTGGTTGAATCAGGAGAAAACT CGCATTTGCTATTATCCATCCTGGTCAAGCACTTGGATCATAAGAGTGTCGCCAAACAACCACTTTTACTGGTAGACATTGTTAATGTCACAGCACGACT TGGACAAAGTGCAAAGCAGCAAGCCACAGTTGCTATCATTGGTGCAATATCTGACTTGATGAAACATTTACGAAAGTGCCTGCAAAATTCTTCTGAATCA TCCAGCCCTAAGGATGGCAGCGATGAAATGAATGCTGATCTTCAGGTTGCCTTGGAAAACTGTATTGCACAGCTCTCAAATAAGGTGGGGGATGTGGGAC CCATACTTGATACGATAGCTGTGTTCTTAGAGAATATTTCAGCCACTACTGTTGTAGCTAGAACAACTATCTCGGCTGTTCACCAAACTGCACGGATTAT CTCTTCCATCCCTAACATATCATATCACAAAAAGGCTTTTCCTGATGCTTTATTCCATCAATTGCTTGTAGCAATGGCCCACCCAGACCATGAGACTAGA GTTGGAGCACATAGTGTCTTCTCTATCTTGCTTATGCCATCCTTGCTTTCTCCTTGGTCAGACCAGAATAAGAAAACCTCTGAAGCTGTTTCTGGGTTTT TTGGTCCATCAGCATCACAAAAGAGGAGTAAAAGTTTCTCCTTTCAGGATGAAAGCAACGATAATGTTGATTCAATGGATGGAAAATCATGGGAAGAAGG CAATCCAATATCAGATAACAGTGGAAAACATGATTCTCATGATCGTTCAAACAGCTTCAAGCATGCTGTCTTAGATGGAAAAACACTAACTTCCCTTCGA TTGAGTAGCCATCAAGTCAGTCTTCTGCTTTCATCAATATGGGTTCAGGCAACATCTGCAGAGAATATGCCCGCAAATTTTGAGGCCATGGGCCATACTT ATAACATTGCTTTGCTTTTCACACGATCTAAGACCTCAAGTCACGTGGCTCTAGTTCGGTGTTTTCAGCTGGCATTCTCACTTAGGAGCATCTCTCTGGA TCAAGAAGCAGGTCTGCAGCCATCTCGCAGAAGGTCCCTCTTCACCTTGGCATCGTTCATGCTTATTTTTGCAGCAAGGGCAGGAAATCTCCCAGAGCTA ATTCCTTTTGTTAAAGTCTCTCTAACGGAAAAAACAGCTGACCCTTATCTTGAATTAGTTGAAGATATCAAGCTGCAAGCTATTTATGTAGAATCTGATG AAGGGAAAATAGCATATGGTTCAGAGGATGATGGTGTTGCTGCTTTAAAATCTCTCTCATGCGTAGAAGTAGATGATAGTCATTTGAAGGAAACCCTGAT ATCCCGATTCATGACAAAATTTGTCAAATTATCAGAGGACGAGTTATCAGGCATAAAACAGCAACTTCTACAGGATTTTTCACCTGATGATGTATATCCT TTAGGAGGTCCCCTGTTTATGGATACACCTAGGCCATGTTCCCCTCTTGCCCGAATGGAGTTTCAGGCATTTGAAGAGATTATGCCTGCAGCTGCCTTGA CGGATGATGAAACCTTCACGGAACTTAATGGAAGCCAGTCAGGTCGCAAAACATCAATATCTGTCCATACACTTGACATTCTAAGTGTCAATGAACTTCT GGAATCAGTCCTGGAAACTGCTCGACAAGTTGCAAGCTCCCAGGTGTCCTCTACACCTGTACCTTATGACCAAATGAAGAGTCAGTGTGAAGCTCTCGTT ACTGGTAAACAGCAGAAAATGTCTATACTACATAGTTTTAAGCATCAACCGGAAGCCAAGGTTTTCCCCAGCACAGATGAAAAGAAGGACACCTCAGTAC ATGATGTGAAAGTGGAGTTGCTGCAATGTGATCTAACATTAGCTACGAGGGATCAAATTAGAGCACCTGATCAACTCGCCCTCTGCTCACTCGAGTACGG ACAAAATTCTTTCAGATTACCACCTTCAAGCCCTTATGACAAATTTTTGAAGGCGGCTGGATGTTGA
AA sequence Show only first row Show all	>Potri.007G128000.9 pacid=42765398 polypeptide=Potri.007G128000.9.p locus=Potri.007G128000 ID=Potri.007G128000.9.v4.1 annot-version=v4.1 MGVMSRRVVPACGSLCFFCPSLRARSRQPVKRYKKLLADILPRNQEAEPNDRKIGKLCEYASKNPLRIPKITDTLEQRFYKELRHENFGSVKVVVCIYRK LLSSCKEQMPLFASSLLSIVRTLLEQTGKDDLRLLACDVLVDFISCQMDGTYMFNLEGLIPKLCQLAQEAGNNERTLRLRSAGLQVLGSMVCFMGEQAHI SMDFDSIISVTLENYIDFQMNPDTMEDQWVQGVLKTEDNGSSFPDISKKVSLSDLTTKPELDLAMDTSKSPSYWSRVCLCNMARLAKEATTIRRVLEPLF QNFDANNHWSLEKGVAYPVLTFLQSLLVESGENSHLLLSILVKHLDHKSVAKQPLLLVDIVNVTARLGQSAKQQATVAIIGAISDLMKHLRKCLQNSSES SSPKDGSDEMNADLQVALENCIAQLSNKVGDVGPILDTIAVFLENISATTVVARTTISAVHQTARIISSIPNISYHKKAFPDALFHQLLVAMAHPDHETR VGAHSVFSILLMPSLLSPWSDQNKKTSEAVSGFFGPSASQKRSKSFSFQDESNDNVDSMDGKSWEEGNPISDNSGKHDSHDRSNSFKHAVLDGKTLTSLR LSSHQVSLLLSSIWVQATSAENMPANFEAMGHTYNIALLFTRSKTSSHVALVRCFQLAFSLRSISLDQEAGLQPSRRRSLFTLASFMLIFAARAGNLPEL IPFVKVSLTEKTADPYLELVEDIKLQAIYVESDEGKIAYGSEDDGVAALKSLSCVEVDDSHLKETLISRFMTKFVKLSEDELSGIKQQLLQDFSPDDVYP LGGPLFMDTPRPCSPLARMEFQAFEEIMPAAALTDDETFTELNGSQSGRKTSISVHTLDILSVNELLESVLETARQVASSQVSSTPVPYDQMKSQCEALV TGKQQKMSILHSFKHQPEAKVFPSTDEKKDTSVHDVKVELLQCDLTLATRDQIRAPDQLALCSLEYGQNSFRLPPSSPYDKFLKAAGC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05960			ARM repeat superfamily protein...		Potri.007G128000 [exp]	0	1
AT4G16150	CAMTA		calmodulin binding;transcripti...		Potri.010G141700 [exp]	2.00	0.7555
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.005G111700 [exp]	9.27	0.7431	ATHK1.3
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Potri.013G004200 [exp]	15.16	0.7000
AT1G27461			unknown protein		Potri.014G015300 [exp]	16.12	0.6806
AT5G42870		ATPAH2	phosphatidic acid phosphohydro...		Potri.014G031000 [exp]	16.30	0.7070
AT5G24630		MID, BIN4	MIDGET, brassinosteroid-insens...		Potri.015G000701 [exp]	17.43	0.7232
AT4G16845		VRN2	REDUCED VERNALIZATION RESPONSE...		Potri.003G081400 [exp]	21.16	0.6271
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.006G242200 [exp]	21.33	0.7198
AT4G27190			NB-ARC domain-containing disea...		Potri.001G426200 [exp]	22.71	0.7418
AT5G25270			Ubiquitin-like superfamily pro...		Potri.006G059700 [exp]	22.73	0.6993

Compare expression of checked genes

Potri.007G128000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.