Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GUN4.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59400 208 / 7e-67 GUN4 GENOMES UNCOUPLED 4, enzyme binding;tetrapyrrole binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G030100 [exp] 295 / 3e-100 AT3G59400 241 / 1e-78 GENOMES UNCOUPLED 4, enzyme binding;tetrapyrrole binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033819 [exp] 221 / 1e-71 AT3G59400 239 / 1e-78 GENOMES UNCOUPLED 4, enzyme binding;tetrapyrrole binding (.1) Lus10018961 [exp] 218 / 5e-70 AT3G59400 229 / 1e-74 GENOMES UNCOUPLED 4, enzyme binding;tetrapyrrole binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05419 [poplar] [flax] GUN4 GUN4-like
Representative CDS sequence Show only first row Show all	>Potri.007G128200.1 pacid=42765687 polypeptide=Potri.007G128200.1.p locus=Potri.007G128200 ID=Potri.007G128200.1.v4.1 annot-version=v4.1 ATGGCGGCCACCAACTCTCTACAGTCCCTCCATCACCATCACTCCCTCCTCAAGTTCCTCCCCTCGGACACCTCCCCGCCCTCCTCCCTCTTCCTCAAGC CCACCACCTCCATCTCCACTGCCACTAACATTTCTCTCTCCCTCTCTATTTCAACAACCACCACTGCCTACTCCATCTCCCCCGCCACCTCCACTGCTCC CTCCACTTCCAAGACCTTCTCCCTCAACCTCCTCCAGCAACACCTCTCCAACCAAAACTTCCGCGAAGCCGATGAGGAAACCCGCAGGCTGCTCATAGTT CTAGCTGGTGAGGCAGCACAGAAACGTGGCTATGTCTTCTTCTCTGAAGTCCAGTTCATACCAGAACAAGACCTTAAAGACATTGATGAACTGTGGAAAA AGTACAGCAACAACAAATTTGGATACAGTGTTCAAAAGAGAATATGGCGACAAAAGGGTAACAAGGACTTCACCAAATTTTTCATCAAAGTTGGGTGGAT GAAGAAGCTTGATACCGAGGTTGAGCAATACAACTATAGGTCTTTTCCTAATGAGTTCATTTGGGAGCTTAATGATGATACTCCTGAAGGTCACTTGCCT CTGACAAATGCACTTAGAGGCATACAGTTGCTCAAAAACATTCTTAGCCATCCTGCTTTTGAGGTAGATGGAGAAGTGGAGGAAGATAAGGTTGAAGGCA ATGAAAATGGAGGGCTAAAGGGACTGAGGGATAGCTCAAAGCCTCCATTAAGCAACAGAGTATTTAAAACAGATTACAGCTTCTGA
AA sequence Show only first row Show all	>Potri.007G128200.1 pacid=42765687 polypeptide=Potri.007G128200.1.p locus=Potri.007G128200 ID=Potri.007G128200.1.v4.1 annot-version=v4.1 MAATNSLQSLHHHHSLLKFLPSDTSPPSSLFLKPTTSISTATNISLSLSISTTTTAYSISPATSTAPSTSKTFSLNLLQQHLSNQNFREADEETRRLLIV LAGEAAQKRGYVFFSEVQFIPEQDLKDIDELWKKYSNNKFGYSVQKRIWRQKGNKDFTKFFIKVGWMKKLDTEVEQYNYRSFPNEFIWELNDDTPEGHLP LTNALRGIQLLKNILSHPAFEVDGEVEEDKVEGNENGGLKGLRDSSKPPLSNRVFKTDYSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59400		GUN4	GENOMES UNCOUPLED 4, enzyme bi...		Potri.007G128200 [exp]	0	1	GUN4.2
AT1G76080		ATCDSP32, CDSP3...	ARABIDOPSIS THALIANA CHLOROPLA...		Potri.002G016401 [exp]	2.44	0.9803
AT3G56940		CRD1, CHL27, AC...	COPPER RESPONSE DEFECT 1, dica...		Potri.006G027300 [exp]	3.46	0.9768	Pt-AT103.2
AT2G34620			Mitochondrial transcription te...		Potri.011G081400 [exp]	6.32	0.9559
AT1G23740		AOR	alkenal/one oxidoreductase, Ox...		Potri.016G136100 [exp]	6.48	0.9706
AT1G67740		YCF32, PSBY	photosystem II BY (.1)		Potri.010G052000 [exp]	7.21	0.9740	PSBY.2
AT3G56940		CRD1, CHL27, AC...	COPPER RESPONSE DEFECT 1, dica...		Potri.016G025000 [exp]	7.41	0.9718	AT103.1
AT3G47470		CAB4, LHCA4	light-harvesting chlorophyll-p...		Potri.015G062200 [exp]	8.48	0.9662	CAB4.1
AT3G26630			Tetratricopeptide repeat (TPR)...		Potri.002G220600 [exp]	11.83	0.9633
AT1G03600		PSB27	photosystem II family protein ...		Potri.005G206200 [exp]	12.84	0.9588
AT5G67150			HXXXD-type acyl-transferase fa...		Potri.003G057200 [exp]	13.96	0.9612

Compare expression of checked genes

Potri.007G128200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.