Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59410 1610 / 0 ATGCN2, GCN2 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 2, protein kinase family protein (.1.2) AT3G02760 112 / 1e-24 Class II aaRS and biotin synthetases superfamily protein (.1) AT3G20860 95 / 5e-20 ATNEK5 NIMA-related kinase 5 (.1) AT1G54510 96 / 7e-20 ATNEK1 NIMA-related serine/threonine kinase 1 (.1.2.3) AT3G44200 93 / 6e-19 IBO1, ATNEK6 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) AT1G76540 89 / 6e-19 CDKB2;1 cyclin-dependent kinase B2;1 (.1) AT1G20930 89 / 1e-18 CDKB2;2 cyclin-dependent kinase B2;2 (.1) AT3G48750 87 / 4e-18 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT3G04810 87 / 4e-17 ATNEK2 NIMA-related kinase 2 (.1.2) AT1G63700 87 / 7e-17 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G071400 [exp] 124 / 2e-28 AT3G02760 879 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1) Potri.001G218100 [exp] 96 / 1e-19 AT3G44200 895 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.016G051900 [exp] 92 / 1e-18 AT3G20860 474 / 5e-163 NIMA-related kinase 5 (.1) Potri.009G020100 [exp] 91 / 3e-18 AT3G44200 869 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.001G018700 [exp] 89 / 7e-18 AT3G20860 503 / 1e-175 NIMA-related kinase 5 (.1) Potri.006G056300 [exp] 89 / 8e-18 AT3G20860 473 / 2e-162 NIMA-related kinase 5 (.1) Potri.004G133500 [exp] 85 / 2e-17 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.002G003400 [exp] 85 / 3e-17 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.013G039000 [exp] 86 / 1e-16 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014895 [exp] 592 / 0 AT3G59410 515 / 1e-173 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 2, protein kinase family protein (.1.2) Lus10014896 [exp] 539 / 0 AT3G59410 517 / 2e-173 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 2, protein kinase family protein (.1.2) Lus10014897 [exp] 479 / 4e-157 AT3G59410 417 / 4e-134 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 2, protein kinase family protein (.1.2) Lus10030341 [exp] 125 / 5e-29 AT3G02760 972 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1) Lus10041073 [exp] 124 / 2e-28 AT3G02760 973 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1) Lus10040499 [exp] 90 / 6e-18 AT3G20860 476 / 2e-164 NIMA-related kinase 5 (.1) Lus10011301 [exp] 89 / 2e-17 AT3G20860 470 / 2e-157 NIMA-related kinase 5 (.1) Lus10001783 [exp] 88 / 2e-17 AT1G54510 705 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10042632 [exp] 88 / 2e-17 AT3G04810 671 / 0.0 NIMA-related kinase 2 (.1.2) Lus10038755 [exp] 84 / 2e-17 AT3G48750 468 / 7e-169 cell division control 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [poplar] [flax] UBC PF05773 [poplar] [flax] RWD RWD domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0458 [poplar] [flax] IIaaRS-ABD PF12745 [poplar] [flax] HGTP_anticodon2 Anticodon binding domain of tRNAs CL0040 [poplar] [flax] tRNA_synt_II PF13393 [poplar] [flax] tRNA-synt_His Histidyl-tRNA synthetase
Representative CDS sequence Show only first row Show all	>Potri.007G128300.2 pacid=42765418 polypeptide=Potri.007G128300.2.p locus=Potri.007G128300 ID=Potri.007G128300.2.v4.1 annot-version=v4.1 ATGGGTCATAGTTCAAAGAAGAAGAAGAAAGGAGGAGGAGGGAGTGGAAGGAGAAGCAAAGGAAGGTCTCAATCAAAAGATCATTCCTTTAATGCATTAG ATGATAATGAGCTTCTTGCTGAAGAGATTACTGCCTTGAATGCAATATTTCAAGAAGATTGCCAGGTCATTTCAGACTCGCCTCCACAAATCACCATAAA GCTCAGGCCTTACTCAAAAGATATGGGCTATGAGGATCTAGACGTTTCAGCTCTGCTTTCAGTCAGGTGCTTGCCTGGATACCCAGACAAGTGTCCAAGG TTGCAGATTACTCCTGAAAAAGGTTTGACAAAATGTGATGCAGATAATCTTCTCTCTCTCCTAAATGACCAGGCAAATTCTAATGCCCGAGAAGGACGAG TAATGATTTTCAATCTGGTGGAGGCTGCTCAAGAGTTCCTCTCAGAAATAGCTCCATTGGTTCCAGCACCTGAACCTGTTTTGTGCTCATCCATTAATAG CAGCATTCAGTTGTTTCAGAAGGACATTGCAGTTTCTAGTAACAAGAGCTGCTTATCCAGGGGACCTTTTGTTTATGGTTTCATAGACCTCTTCAGTGGC TGTGGAGAGTCATGGCATTGGGGTCTTGCTGTGGATGAATTAAAATCCCATGTGTTAGACCATTCAGAAGTTGGATATGAGGTACAGGAGAAGAAACTTG ATAAGATTACAAAGCCATTGACAGTCCAAGAGGCAAAGCAAGGTCTGTTGGTTTCCCCTATTGCCAAGTTGGATACCCTTGAAGAAGAAAGTGAATATGA AAATAAGGGCCTATCTACTTCTAATTCAAGTAGATCTCTAGTGGAGGAATTGGCAGGAATTGACATGAAAGGGGAGAAGCAGGGTATTTTTCTCGAGGAG CATGGCTATGGGTTAGAAGACGATGATGACCAGGACGATGGTGACAATAGCAATGATGATGAAGATTTTGAAAGTGAGCCTTGGGAATCACTGTCATCGA ATTCCTTAGGGTTTAATCAAGCATCTCAAACTATTGAAAAGGATCTTATAATGGTTCATCTTCTTCATCTTGCTTGTGCCTCAAAAGGAGAATTGGTTGA TTCTCTACCTCAAATAACCACCGAACTCTGCAACTTAGGTATAATTCCTGAGTCAGTACGGGAATTAGCTTCTAAACCATCCTCAACGTTTAACAAGACA TTTGATCATGTTTTCCATCAACATACGGTCTCATCTAGAGTATCTCAATTTTGGAAACCTACTTCTGATTTAGGAGGGGCTAGTGCATCTCTCCCAAGCT CTCGATATCTGAATGACTTTGAAGAGCTGCAACCCCTTGGTCATGGTGGTTTTGGCCATGTTGTATTGTGCAAAAATAAGCTTGATGGAAGGCAGTATGC GGTGAAGAAAATTCGCCTCAAGGACAAAACCCTGCCTGTTAATGATCGAATCCTGAGGGAAGTAGCCACCCTTTCACGTTTGCAGCATCAGCATGTTGTC CGATACTATCAGGCATGGTTTGAAACAGGAGTTGTTGGTATTTTTGGTGACTCCACTTGGGGTTCTGCTACTGCAGCAAGCTCCACATTCAGCTACAAGG GTGCAAGCTCTGCTGGTGTTGGGCAAGAGAATAAGCTCGAATCAACGTATCTGTACATTCAAATGGAATTTTGCCCCAGGACTCTCCGCCAGGTTTTTGA ATCATATAATCATTTTGACAAAAACTTAGCATGGCATTTATGTCGGCAAATTGTGGAAGGCTTGGCACACATACATGCACAAGGAATCATTCATCGAGAC TTGACCCCTAATAACATATTTTTTGATGCTCGGAATGATATTAAAATTGGAGATTTTGGTCTCGCCAAGTTCTTGGAATTGGAGCAGCTGGATCATGATG CAGCTTTGCCTACAGATACAGCTGGAGTTTCAATGGACGGTACTGGTCAAGTTGGAACCTACTTTTATACTGCTCCTGAAATTGAGCAAGGATGGCCAAA GATTGATGAAAAGGCTGACATGTACAGCTTAGGAATTGTGTTTTTTGAGGTTTGGCACCCTTTTGGGACAGCCATGGAGAGACATGTTATTCTATCTGAT CTGAAACAAAAGGGAGAGCTTCCTCCCTCATGGGTTGCTCAATTTCCAGAGCAAGCATCCTTGTTGCGGCGCTTAATGTCTCCAAGTCCATCAGATCGTC CATCTGCCAAAGATCTTCTAAAGCATGCATTTCCTCCAAGAATGGAATCCGAGTTGTTAGATAATATGCTAAGAACAATGCAAACTTCTGAGGACAGAAG TGTGTATGATAAAGTTGTGAATGCTATCTTTGATGAAGAGATGTTACACATGAAAAACCAACATCAACGTGCTGGTAGATTGAGGATTGCCAGAGATGAT ACTTCCTGTATCCAGCTTGAAGATTTAGACACTGAGCTCCGTGATTGTGTTATTGAAATTGTTAGAGAAGTGTTCAAACTACATTGTGCAAAGCATCTGG AAATAATACCCGTGCGCTTATTGGATGATTCCCCACAATTTAACAGGAACACTGTAAAACTTTTGACCCATGGGGGAGATTTGCTCGAACTTTGTCATGA GCTGCGTCTGCCATTTGTTAAATGGCTTATTGCAAACCAGAAATCATCTTTCAAACGATATGAAATATCATCTGTTTTTAGAAGAGCAATTGGTCATTCA CCACCAAATCGCTATCTCCAGGGAGATTTTGACATTATTGGAGGTGCATCAGCTCTGACAGAGGCAGAGGCTATTAAGGTGACAATGGACATCGTAACTC GCTTCTTTTTCCCAGATTCTTGTGATATTCATCTAAATCATGGGGACCTACTGGATGCTATCTGGTCTTGGGTAGGAATCAAGCCAGAGCATAGGCAGAA AGTAGCAGAGCTTCTTTCTCTGATGGGTTCTTTGCGCCCCCAATCCTCTGAACGGAAGCTGAAATGGGCAGTTATTAGGCGTCAGCTTTTGCAGGAATTA AATTTAGCAGAAGCTGTTGTGAATAGGTTGCAGACTGTTGGTTTGAGGTTCTGTGGAGCAGCAGACCAGGCCCTTCCTCGGTTAAGGGGAGCTCTGCCAG CTGATAATCGTATCCGGAAGGCACTTGATGAGCTATCAGACCTCTTTATCCATTTGAGGGTTTGGAAGATAGAGAACCATGTGTACATAAATGCTCTGAT GCCACCAACTGAAAATTATCATAGAGATTTGTTTTTTCAGATATATTTAACTAAGGAGAACAATCCTGGATCAGTTAATGAAGGCGCATTGCTTGCTGTT GGTGGGCGGTATGACTATTTGCTGCATCAAATGTGGGATAATGAATATAGAGCAAGTCCTCCTGGTGCTGTTGGCACCAGCCTTGCATTAGAGACAATTA TTCAGTATTCTCCTGGAGAGTTCAAGCCTGTTAGAAATGAAGCTGCCACCGCTGTTCTTGTTTGTTCAAGAGGAGGAGGAGGTTTATTGGTTGAGCGCAT GGAATTAGTTTCTGAATTATGGGAAGGGAATATTAAGGCTGAGTTTGTCCCACAACCTGATCCAAGCCTTACAGAGCAGTATGAATATGCAAGTGAGCAT GATATAAGATGCCTTGTCATCATAACAGATGCAGGGGTATCACGAACAGATGTTGTCAAGGTTCGTCATATCGAACTTAAGAAGGAGAAGGAGGTTGCAA GAGAAAAGCTTGTCAGGTTTCTGTTGGATGCAATGGCAACACTGTTTAGAAACCCCTCAGTTTGGAATTAG
AA sequence Show only first row Show all	>Potri.007G128300.2 pacid=42765418 polypeptide=Potri.007G128300.2.p locus=Potri.007G128300 ID=Potri.007G128300.2.v4.1 annot-version=v4.1 MGHSSKKKKKGGGGSGRRSKGRSQSKDHSFNALDDNELLAEEITALNAIFQEDCQVISDSPPQITIKLRPYSKDMGYEDLDVSALLSVRCLPGYPDKCPR LQITPEKGLTKCDADNLLSLLNDQANSNAREGRVMIFNLVEAAQEFLSEIAPLVPAPEPVLCSSINSSIQLFQKDIAVSSNKSCLSRGPFVYGFIDLFSG CGESWHWGLAVDELKSHVLDHSEVGYEVQEKKLDKITKPLTVQEAKQGLLVSPIAKLDTLEEESEYENKGLSTSNSSRSLVEELAGIDMKGEKQGIFLEE HGYGLEDDDDQDDGDNSNDDEDFESEPWESLSSNSLGFNQASQTIEKDLIMVHLLHLACASKGELVDSLPQITTELCNLGIIPESVRELASKPSSTFNKT FDHVFHQHTVSSRVSQFWKPTSDLGGASASLPSSRYLNDFEELQPLGHGGFGHVVLCKNKLDGRQYAVKKIRLKDKTLPVNDRILREVATLSRLQHQHVV RYYQAWFETGVVGIFGDSTWGSATAASSTFSYKGASSAGVGQENKLESTYLYIQMEFCPRTLRQVFESYNHFDKNLAWHLCRQIVEGLAHIHAQGIIHRD LTPNNIFFDARNDIKIGDFGLAKFLELEQLDHDAALPTDTAGVSMDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFEVWHPFGTAMERHVILSD LKQKGELPPSWVAQFPEQASLLRRLMSPSPSDRPSAKDLLKHAFPPRMESELLDNMLRTMQTSEDRSVYDKVVNAIFDEEMLHMKNQHQRAGRLRIARDD TSCIQLEDLDTELRDCVIEIVREVFKLHCAKHLEIIPVRLLDDSPQFNRNTVKLLTHGGDLLELCHELRLPFVKWLIANQKSSFKRYEISSVFRRAIGHS PPNRYLQGDFDIIGGASALTEAEAIKVTMDIVTRFFFPDSCDIHLNHGDLLDAIWSWVGIKPEHRQKVAELLSLMGSLRPQSSERKLKWAVIRRQLLQEL NLAEAVVNRLQTVGLRFCGAADQALPRLRGALPADNRIRKALDELSDLFIHLRVWKIENHVYINALMPPTENYHRDLFFQIYLTKENNPGSVNEGALLAV GGRYDYLLHQMWDNEYRASPPGAVGTSLALETIIQYSPGEFKPVRNEAATAVLVCSRGGGGLLVERMELVSELWEGNIKAEFVPQPDPSLTEQYEYASEH DIRCLVIITDAGVSRTDVVKVRHIELKKEKEVAREKLVRFLLDAMATLFRNPSVWN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59410		ATGCN2, GCN2	ARABIDOPSIS THALIANA GENERAL C...		Potri.007G128300 [exp]	0	1
AT1G02080			transcription regulators (.1.2...		Potri.014G058800 [exp]	3.00	0.8291
AT1G63500			Protein kinase protein with te...		Potri.001G104700 [exp]	12.24	0.7535
AT5G24740			Protein of unknown function (D...		Potri.001G455600 [exp]	12.56	0.7573
AT1G72560		PSD	PAUSED, ARM repeat superfamily...		Potri.001G168100 [exp]	18.38	0.6288	PSD.1
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.004G081800 [exp]	21.84	0.7571
AT1G58230			binding (.1)		Potri.002G111000 [exp]	22.04	0.7535
AT4G17610			tRNA/rRNA methyltransferase (S...		Potri.001G150900 [exp]	22.91	0.7485
AT1G02080			transcription regulators (.1.2...		Potri.002G143000 [exp]	26.22	0.7541
AT1G05670			Pentatricopeptide repeat (PPR-...		Potri.019G075900 [exp]	32.68	0.7325
AT3G06670			binding (.1.2)		Potri.008G107300 [exp]	33.16	0.7355

Compare expression of checked genes

Potri.007G128300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.