Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ACR4.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59420 1264 / 0 ACR4 crinkly4 (.1) AT3G09780 346 / 6e-106 CCR1, ATCRR1 CRINKLY4 related 1 (.1) AT2G39180 324 / 1e-97 CCR2, ATCRR2 CRINKLY4 related 2 (.1) AT5G47850 322 / 3e-97 CCR4 CRINKLY4 related 4 (.1) AT5G28680 260 / 7e-74 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT3G55950 258 / 2e-73 CCR3, ATCRR3 CRINKLY4 related 3 (.1) AT3G04690 258 / 2e-73 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT3G07070 246 / 6e-73 Protein kinase superfamily protein (.1) AT3G58690 246 / 7e-73 Protein kinase superfamily protein (.1) AT5G38990 255 / 6e-72 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G029900 [exp] 1705 / 0 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.010G221200 [exp] 379 / 2e-118 AT2G39180 899 / 0.0 CRINKLY4 related 2 (.1) Potri.016G089200 [exp] 369 / 2e-114 AT3G09780 946 / 0.0 CRINKLY4 related 1 (.1) Potri.010G188600 [exp] 330 / 1e-99 AT3G55950 791 / 0.0 CRINKLY4 related 3 (.1) Potri.019G078300 [exp] 324 / 1e-97 AT5G47850 699 / 0.0 CRINKLY4 related 4 (.1) Potri.013G103300 [exp] 307 / 2e-91 AT5G47850 649 / 0.0 CRINKLY4 related 4 (.1) Potri.008G068700 [exp] 263 / 2e-75 AT3G55950 786 / 0.0 CRINKLY4 related 3 (.1) Potri.001G260800 [exp] 250 / 2e-74 AT3G51990 419 / 5e-146 Protein kinase superfamily protein (.1) Potri.017G096400 [exp] 246 / 1e-72 AT3G51550 451 / 6e-151 FERONIA, Malectin/receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000764 [exp] 1399 / 0 AT3G59420 1255 / 0.0 crinkly4 (.1) Lus10015956 [exp] 1399 / 0 AT3G59420 1258 / 0.0 crinkly4 (.1) Lus10029170 [exp] 332 / 1e-100 AT5G47850 678 / 0.0 CRINKLY4 related 4 (.1) Lus10041404 [exp] 328 / 3e-99 AT2G39180 849 / 0.0 CRINKLY4 related 2 (.1) Lus10036524 [exp] 327 / 5e-99 AT2G39180 848 / 0.0 CRINKLY4 related 2 (.1) Lus10018242 [exp] 284 / 9e-83 AT3G55950 632 / 0.0 CRINKLY4 related 3 (.1) Lus10012995 [exp] 251 / 2e-76 AT5G47850 372 / 9e-125 CRINKLY4 related 4 (.1) Lus10038595 [exp] 253 / 1e-75 AT5G54380 718 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10016371 [exp] 251 / 8e-74 AT3G51990 402 / 3e-138 Protein kinase superfamily protein (.1) Lus10027509 [exp] 257 / 5e-73 AT5G24010 996 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.007G128400.1 pacid=42766578 polypeptide=Potri.007G128400.1.p locus=Potri.007G128400 ID=Potri.007G128400.1.v4.1 annot-version=v4.1 ATGAGGAATTCGAGCTATTCTGTTAGAGATTTTTTTATCAGGGTCTTGATGATCGGCAAATGGAATGGTGGATATTTGGTTCATTTTGTGGTTCTATCAG ATTTATGGTGGCTAGTCTCAGGTTTAGGCTCCATGTCTTCCATTGCCATTTCTTATGGTGAGAATGGTCCTGTCTTTTGTGGTCTAAAATCAGATGGGTC TCATCTTGTGAATTGTTATGGTTCAAATTCAGCTATAATCTATGGAACTCCAGCTCATTTCCATTTTATTGGTCTAACTGCTGGAGATGGCTTTGTTTGT GGGCTTCTGTTGGAATCTAACCAACCGTATTGTTGGGGAAGTAGTGGCTATCTTCGACCAGGTGTGCCTCGGCCTATGATGGAAGAGGCCGAGTATGTAG AAATCAGTGCTGGCGATTACCATTTATGTGGTTTGAGAAAGCCTTCAACAGGCAGGAGTAGAAACCTTTCCCTTATTGATTGTTGGGGTTACAACATGAC AAGGAACCATGTGTTTGATGGGCAGATTCAATCAATCTCAGCTGGTTCTGAGTTCAACTGTGGATTGTTTTCGGAGAATAGGACTGTTTTCTGTTGGGGT GATGAGGCTAATAGTCGTGTAATCAGCTTGATTCCTCAAGAAATGAGGTTTCAAAAGATTGCCGCTGGTGGATATCATGTTTGTGGGATTTTAGAGGGGG TGAATTCAAGAGCCTTCTGTTGGGGAAGGAGCCTGGGCCTTGAAGAAGAGATTTCTGTCATATCAGCAGCATATTTGAACCAAGGAAATGTTGATTTTCC TCCTAGTGATCCTATGTTGTCTGTCGTGGGAGGAAAGTTCCATGCTTGTGGAATCAAGAGCTATGACCGCGAGGTGATTTGTTGGGGCTATATTGTAAAG CGAAGCACTCCAACCCCGTCTGCCATTAAGGTCTATGAAATCGCTGCTGGAAATTACTTCACTTGTGGAATTCTCGCCGAGAAATCCCTCTTACCTGTTT GTTGGGGTCTTGAGTTCCCTAGCTCTCTTCCCCTAGCTGTTTCGCCTGGACTCTGTGAAACTACTCCTTGTCCTCCTGGTTCCTATGAATTTTTCGATGC TAATCCACCTTGCAAGTCTCCAGACTCTCATGCTTGTTTGCCTTGCAGTAATGGTTGCCCTGCTGAAATGTACCAGAAAATGGAATGTACTTTGAAATCA GATCGTCAGTGTGATTATAATTGTTCAAGTTGCTATTCAGCAGAATGCTTCTCAAACTGTTCTTCCTTATATTCCAATAATGCTAAAGGAAAGAACAGGT TTTGGTCATTGGAATTGCCGGTTGTTATTGCAGAGATTGGCCTTGCTGTGTTCTTGGTGATTGTTGTAACAACAACTGCTATTTTGTATGTTCACTATAG GCTGAGGAACTGTCAATGCTCGGCAAAACAATTGAAGCCCAAGAAAAACAACGGCGGCGGTACTTCAGTTTCTAAAGATAACGGGAAGATCCGTACTGAC ATGGATGAGATTAAGTTAAGGAGGGCAAGGATGTTCACTTATGAGGAACTTGAGGGGGCCACCAGCGGATTCAAGGAAGAATCCATAGTGGGAAAGGGAA GTTTCTCATGTGTTTATAAGGGGGTATTAAAGAATGGGACAGTTGTTGCGGTTAAAAAGGCTATTGTGTGTACTGATAAGCAGAAAAACTCCAAAGAATT CCACACTGAGCTAGATCTGCTATCAAGGTTAAACCATGCTCATTTACTCAACCTGCTTGGCTATTGTGAAGAGGGTGGAGAAAGGCTTCTGGTTTACGAA TTCATGGCTCATGGATCCTTGTACCAGCATCTTCATGGGAAGAACCCTGCCTTAATAGAGCAATTGGATTGGGTTCGAAGGGTTACCATTGCAGTCCAAG CAGCTAGGGGAATCGAATACTTGCATGGTTATGCTTGTCCACCTGTAATTCATCGAGACATCAAATCTTCAAACATTCTCATTGATGAAGAACACAATGC CAGGGTGTCTGATTTTGGCCTTTCTTTGTTGGGACCAGCTGATAGTAGTTCGCCGTTGGCTGAGCTTCCTGCAGGAACTCTTGGCTATCTTGATCCTGAG TACTACAGGCTTCACTACCTCACAACCAAATCCGATGTTTATAGCTTTGGCGTGTTGCTCTTAGAAATCCTCAGTAGCAGAAAGGCCATAGATATGCAAT ACGAAGAAGGAAATATAGTTGAATGGGCAGTTCCTCTGATCAAAGCAGGAGATATATCAGCCATATTGGACCCAGCGTTGAAGCCTCCATCTGATCCCGA AGCTTTGAAAAGGATTGCAAATGTAGCTTGCAAGTGTGTTAGAATGAGGGGGAAGGAAAGGCCATCCATGGATAAAGTAACAACAGCTTTAGAACGTGCC CTTGCACAGTTGATGGGCAGCCCATGCAATGACCAACCAATATTGCCGACCGAAGTTGTTCTTGGAAGCAGTAGAATGCATAAGAAATCCTCCCAGAGGT CTTCAAACCAATCAGCAGTCTCAGAAACTGATGTCGTCGAAGGCGAAGACCAAAGGATCGAGTTTCGAGCACCTTCATGGATAACTTTTCCAAGCGTTAC TTCCTCCCAAGGGAGAAAGTCATCAGCCTCGGATGCAGATGTCGATGGTAAATCCTCAGCAAGAAATTTAGGCTATGTTGCAAGTGTAGGGGATGCGCTG AGGAGCTTGGAGGAAGAGATTGGACCTGCCTCACCTCAAGAAAGATTGTTCTTGCAGCATAACTTCTGA
AA sequence Show only first row Show all	>Potri.007G128400.1 pacid=42766578 polypeptide=Potri.007G128400.1.p locus=Potri.007G128400 ID=Potri.007G128400.1.v4.1 annot-version=v4.1 MRNSSYSVRDFFIRVLMIGKWNGGYLVHFVVLSDLWWLVSGLGSMSSIAISYGENGPVFCGLKSDGSHLVNCYGSNSAIIYGTPAHFHFIGLTAGDGFVC GLLLESNQPYCWGSSGYLRPGVPRPMMEEAEYVEISAGDYHLCGLRKPSTGRSRNLSLIDCWGYNMTRNHVFDGQIQSISAGSEFNCGLFSENRTVFCWG DEANSRVISLIPQEMRFQKIAAGGYHVCGILEGVNSRAFCWGRSLGLEEEISVISAAYLNQGNVDFPPSDPMLSVVGGKFHACGIKSYDREVICWGYIVK RSTPTPSAIKVYEIAAGNYFTCGILAEKSLLPVCWGLEFPSSLPLAVSPGLCETTPCPPGSYEFFDANPPCKSPDSHACLPCSNGCPAEMYQKMECTLKS DRQCDYNCSSCYSAECFSNCSSLYSNNAKGKNRFWSLELPVVIAEIGLAVFLVIVVTTTAILYVHYRLRNCQCSAKQLKPKKNNGGGTSVSKDNGKIRTD MDEIKLRRARMFTYEELEGATSGFKEESIVGKGSFSCVYKGVLKNGTVVAVKKAIVCTDKQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYE FMAHGSLYQHLHGKNPALIEQLDWVRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVSDFGLSLLGPADSSSPLAELPAGTLGYLDPE YYRLHYLTTKSDVYSFGVLLLEILSSRKAIDMQYEEGNIVEWAVPLIKAGDISAILDPALKPPSDPEALKRIANVACKCVRMRGKERPSMDKVTTALERA LAQLMGSPCNDQPILPTEVVLGSSRMHKKSSQRSSNQSAVSETDVVEGEDQRIEFRAPSWITFPSVTSSQGRKSSASDADVDGKSSARNLGYVASVGDAL RSLEEEIGPASPQERLFLQHNF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59420		ACR4	crinkly4 (.1)		Potri.007G128400 [exp]	0	1	ACR4.3
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.008G161200 [exp]	1.00	0.9532	IAA14.1
AT3G59420		ACR4	crinkly4 (.1)		Potri.017G029900 [exp]	3.16	0.9442	Pt-ACR4.2
AT5G28300	Trihelix		Duplicated homeodomain-like su...		Potri.013G039100 [exp]	3.87	0.9238
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.018G152600 [exp]	6.24	0.9290
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Potri.012G130400 [exp]	6.92	0.9196	ERL1.2
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Potri.005G086500 [exp]	7.07	0.9046	Pt-BRI1.1
AT3G63230			Protein of unknown function (D...		Potri.005G212500 [exp]	7.48	0.8819
AT5G46880	HD	HDG5, HB-7	HOMEODOMAIN GLABROUS 5, homeob...		Potri.003G096000 [exp]	8.48	0.9255
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Potri.016G072900 [exp]	9.89	0.9183
AT1G73360	HD	ATHDG11, HDG11,...	ENHANCED DROUGHT TOLERANCE 1, ...		Potri.015G034100 [exp]	11.40	0.8830

Compare expression of checked genes

Potri.007G128400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.