Plant FIBer expression Database

Potri.007G128500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G59430 124 / 1e-30 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G029800
[exp]
917 / 0 AT3G59430 107 / 1e-24 unknown protein
Potri.002G066450
[exp]
45 / 0.0002 AT1G76740 64 / 1e-09 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.007G128500.5 pacid=42766786 polypeptide=Potri.007G128500.5.p locus=Potri.007G128500 ID=Potri.007G128500.5.v4.1 annot-version=v4.1
ATGTTAAATAAGGAAGGTGATGGAGGAAAGGAGTATTTTCGCAAACTTTCGAGAAAAGAACTTCAAAGTTTGTGTAAGCAATGTAGCTTGCCTGCTAGAA
AATCAAGCTCTGAAATGGTCGAATCACTTGCTTTTTACTTTATGAGGAAGGGTTTGAATTTGGTATCATCAGGCACAAGCATAGATGGGGTTCAAGATGC
TTTACTTCACACATCTTTGATGCCACCAATGCAGCCTAAGCCTGCATTAAATTCTATAAAAGATAGCTTTGAACTCACATCTCGTCCTGGAGAGGAGATT
TACAAAGGAAATAGAAATTTCAAATCCAATAATTTGGAAAGTTTTATTGGCCCTGGAGCTTATAATAAGGAAAGCTTTGGTGGCTTAATTAGTAATTTCC
AAGAGGTATCTCCATCTCAGTTTTTTTCTCAATACGCTGGGAGTCATGTCAACTTTAAGAAGCCATTAAGCCTTGGTGGCAGGGTAGAAGATTCACCCCA
ATTTCATGGTAGAGACATAAATACTGTAGCCTGTTCTAAAGAGATTGGCCTTCCTTCTATTATAACTACTGCAAATGTTCCGGCATCTTTTGAATTTCAT
GTCAGTTCAGAAGAGGGGATCAAACTTTGTGTTGATTTGAATTCAAGCCCATTAGAGTGGATTAAGAAATATAAAAATCAGGTTTCGTTGTGCGACAATG
TGGTTAATACAAAGTCTCGAAGTCTTTATGAAGAGCTTGGGTGTATTGGAGAGAGTAATAAAAAACTGAAAAGTTCTGTACTTCAGAATATTGATTCTGG
CAAAAATAGGGATGACTCTGTGCAAGCTGAACCTTCTCCGAGTTCAGTTGGAGAAAAAAATAGTCATGTGAGGAATGGTCATCCAGATGGAGGTGATAAT
TCCCTAATCTCATCACCTGTAATACCATGCAGTGTAGCTGTCGATGTTTCCTTGTACTTAAAGGAGGATCCAGGACTTGCCTCAGCCAAACCCAGTTCTG
ATGGGCAGAATCACAAAAATTTGAACACTGAATCCTGTAGTGAAAAGGAGTGCATAGCTGCCCCTGACTCAGATATTACTGATACTCCATTAGAAAAGAC
AGCCTGCAATTTTGCTGTCAACTCCATATCCAATGGTTCCGTAGATCATATTGCATTGATGCATCAGAGTTCAAAGTGGGATGATGAAGTCTGTGAGAAT
TCAACCCAGCAGAACAGTTGTAATCTTGAGAATGCTAGTGTTGTATTTCCTGGGTGCTTTATGGAGATGCAGTTATCAGAAACTGGGAATTATCACAAAG
ATGCATCATGTTTACCTCATAAAAATGGCGAATTCTTGGATCCATATGATTCAAAGCACAATAGAGGATCTGAGCAAGATGGATTAGCCAACTCAAGTGA
GAATGATCATTGCAAGAACCAGGTGCCCACATGCTCCGAAGAGCAGGAATGGAGCAATGCTATCAATGGCAGGGAGAGTTCAGTATGCTCGCAGGTTGAT
GACTCAGTTGATAAGACTTCTTTAAAGTCTGGTGTTATCAAATCAAGTGAAGAACTCCTTAGAAAGAGGCCACATATATATAGAGTGAGTCAGAATGGCC
GTCGCAAAAGCGACACGATAATTTTGAGAAGCACAAGGCGTTCTGCTGGAAAGGTCCTTCCTAGAAGATCCATGAGGCTAGTCTCTAAGTGA
AA sequence
>Potri.007G128500.5 pacid=42766786 polypeptide=Potri.007G128500.5.p locus=Potri.007G128500 ID=Potri.007G128500.5.v4.1 annot-version=v4.1
MLNKEGDGGKEYFRKLSRKELQSLCKQCSLPARKSSSEMVESLAFYFMRKGLNLVSSGTSIDGVQDALLHTSLMPPMQPKPALNSIKDSFELTSRPGEEI
YKGNRNFKSNNLESFIGPGAYNKESFGGLISNFQEVSPSQFFSQYAGSHVNFKKPLSLGGRVEDSPQFHGRDINTVACSKEIGLPSIITTANVPASFEFH
VSSEEGIKLCVDLNSSPLEWIKKYKNQVSLCDNVVNTKSRSLYEELGCIGESNKKLKSSVLQNIDSGKNRDDSVQAEPSPSSVGEKNSHVRNGHPDGGDN
SLISSPVIPCSVAVDVSLYLKEDPGLASAKPSSDGQNHKNLNTESCSEKECIAAPDSDITDTPLEKTACNFAVNSISNGSVDHIALMHQSSKWDDEVCEN
STQQNSCNLENASVVFPGCFMEMQLSETGNYHKDASCLPHKNGEFLDPYDSKHNRGSEQDGLANSSENDHCKNQVPTCSEEQEWSNAINGRESSVCSQVD
DSVDKTSLKSGVIKSSEELLRKRPHIYRVSQNGRRKSDTIILRSTRRSAGKVLPRRSMRLVSK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G59430 unknown protein Potri.007G128500
[exp]
0 1
AT4G10770 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPT... Potri.007G056900
[exp]
7.93 0.8134
AT5G49760 Leucine-rich repeat protein ki... Potri.004G232400
[exp]
14.07 0.7985
AT3G21240 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) Potri.018G094200
[exp]
17.83 0.7884 4CL1.4
AT1G20780 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-B... Potri.001G024600
[exp]
27.74 0.7859
AT5G50400 ATPAP27, PAP27 ARABIDOPSIS THALIANA PURPLE AC... Potri.015G095900
[exp]
28.10 0.7645 Pt-PPD3.1
AT3G23160 Protein of unknown function (D... Potri.010G074000
[exp]
30.74 0.7526
AT3G62700 ATMRP10, ABCC14 ATP-binding cassette C14, mult... Potri.002G205500
[exp]
38.15 0.7709 MRP4.1
AT5G61520 Major facilitator superfamily ... Potri.016G120700
[exp]
39.19 0.7354
AT5G45380 ATDUR3 DEGRADATION OF UREA 3, solute:... Potri.003G104000
[exp]
51.74 0.7537
AT1G11340 S-locus lectin protein kinase ... Potri.011G035700
[exp]
67.08 0.7215

Potri.007G128500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.