Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07500 138 / 3e-40 FAR1_related Far-red impaired responsive (FAR1) family protein (.1) AT3G59470 131 / 3e-37 FAR1_related Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) AT2G43280 129 / 5e-37 FAR1_related Far-red impaired responsive (FAR1) family protein (.1) AT4G12850 106 / 3e-28 FAR1_related Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2), Far-red impaired responsive (FAR1) family protein (.3) AT4G38180 101 / 3e-24 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT3G06250 99 / 1e-23 FAR1_related FRS7 FAR1-related sequence 7 (.1) AT5G18960 92 / 7e-21 FAR1_related FRS12 FAR1-related sequence 12 (.1) AT4G15090 72 / 4e-14 FAR1_related FAR1 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) AT3G22170 70 / 2e-13 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2) AT2G32250 67 / 1e-12 FAR1_related FRS2 FAR1-related sequence 2 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G128800 [exp] 203 / 2e-65 AT3G07500 124 / 8e-35 Far-red impaired responsive (FAR1) family protein (.1) Potri.002G239300 [exp] 199 / 1e-63 AT2G43280 130 / 2e-37 Far-red impaired responsive (FAR1) family protein (.1) Potri.007G128900 [exp] 192 / 6e-61 AT3G07500 154 / 2e-46 Far-red impaired responsive (FAR1) family protein (.1) Potri.014G176500 [exp] 162 / 8e-50 AT3G07500 275 / 2e-94 Far-red impaired responsive (FAR1) family protein (.1) Potri.017G029400 [exp] 137 / 7e-40 AT2G43280 319 / 4e-112 Far-red impaired responsive (FAR1) family protein (.1) Potri.007G129500 [exp] 121 / 2e-33 AT3G59470 260 / 9e-88 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Potri.017G029100 [exp] 115 / 4e-31 AT3G59470 323 / 1e-112 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Potri.014G176600 [exp] 112 / 3e-30 AT4G12850 178 / 5e-57 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2), Far-red impaired responsive (FAR1) family protein (.3) Potri.002G239400 [exp] 110 / 1e-29 AT4G12850 207 / 1e-68 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2), Far-red impaired responsive (FAR1) family protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026854 [exp] 78 / 1e-16 AT3G59470 121 / 1e-32 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Lus10020226 [exp] 77 / 2e-16 AT3G59470 120 / 7e-33 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Lus10026732 [exp] 52 / 2e-08 AT3G07500 88 / 2e-22 Far-red impaired responsive (FAR1) family protein (.1) Lus10025517 [exp] 49 / 1e-07 AT2G43280 87 / 1e-22 Far-red impaired responsive (FAR1) family protein (.1) Lus10013855 [exp] 40 / 0.0003 AT4G38170 89 / 5e-22 FAR1-related sequence 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03101 [poplar] [flax] FAR1 FAR1 DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.007G128700.5 pacid=42765583 polypeptide=Potri.007G128700.5.p locus=Potri.007G128700 ID=Potri.007G128700.5.v4.1 annot-version=v4.1 ATGACTAGCACTACTGATGGGCGCAGTTTTCTGGATATTGATGAAGGTTCAGATGAGGAAATGTTTGAAAGTTTTGGTGAACATGAAGCTTCACAAGATG GGTTGTTGCAGCAATGCATTTCACAGCGTGTTGTGGATAATGGCATGATTTTGACAGAATCATCTATGGAAAATTTAAGTGTGGATGGTTTAGAACCGTA TACTGGGATGACTTTTCCATCTTTAGATGATGCAAGAGATTTCTATTATGAATATGCCAAGCGAACAGGTTTCACCATTCGAACAAATCGGATCAGACAT TCACTAAAGAGCATGGCAGTTATAGGACGTGACTTTGTTTGTTCAAGAGAAGGCTTTCGTGCTGCAAAGCACTCGCTGAGAAAAGACAGAGTTCTTCCTC CACGTCCAGTTACAAGAGAAGGTTGCAAAGCCATGATAAGACTGGCAGCAAGGGATGGAGGGAAATGGGTAGTTACCAAATTTGTGCAAGAGCACAATCA CAAGCTAATGACTCACTGTAAATTTCTTGGAGAATTGCCAACTATAAATATACTTAGCGAGGAGGAAAAGGATAAGAAGATCCAGGACTTGTATGGCGAG CTTCAGCGCGAAAGAGAACGATCTGCAGCATTCCAACAACAGCTATGCATGATTCTCAAAGATCTCAAGGAACATGAGGAATTCGTGTCTTTAAGAGTTG AAGATATAATTAAGACTTTGAAAGAAATTGAACTAGGTGTTTTATAG
AA sequence Show only first row Show all	>Potri.007G128700.5 pacid=42765583 polypeptide=Potri.007G128700.5.p locus=Potri.007G128700 ID=Potri.007G128700.5.v4.1 annot-version=v4.1 MTSTTDGRSFLDIDEGSDEEMFESFGEHEASQDGLLQQCISQRVVDNGMILTESSMENLSVDGLEPYTGMTFPSLDDARDFYYEYAKRTGFTIRTNRIRH SLKSMAVIGRDFVCSREGFRAAKHSLRKDRVLPPRPVTREGCKAMIRLAARDGGKWVVTKFVQEHNHKLMTHCKFLGELPTINILSEEEKDKKIQDLYGE LQRERERSAAFQQQLCMILKDLKEHEEFVSLRVEDIIKTLKEIELGVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07500	FAR1_related		Far-red impaired responsive (F...		Potri.007G128700 [exp]	0	1
AT2G23200			Protein kinase superfamily pro...		Potri.005G143200 [exp]	4.00	0.8778
AT5G18260			RING/U-box superfamily protein...		Potri.013G060900 [exp]	6.70	0.8752
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Potri.014G150600 [exp]	8.36	0.8592
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.016G105300 [exp]	10.58	0.8706
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Potri.005G175400 [exp]	11.09	0.8835
AT2G37000	TCP	TCP11	TCP family transcription facto...		Potri.016G094800 [exp]	11.22	0.8679
AT1G33780			Protein of unknown function (D...		Potri.019G073000 [exp]	15.49	0.8854
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.006G014400 [exp]	20.71	0.8430
AT4G15950		RDM2, NRPE4, NR...	RNA-DIRECTED DNA METHYLATION 2...		Potri.016G003200 [exp]	30.59	0.8179
AT5G18650			CHY-type/CTCHY-type/RING-type ...		Potri.008G205400 [exp]	34.48	0.8442

Compare expression of checked genes

Potri.007G128700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.