Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07500 153 / 3e-46 FAR1_related Far-red impaired responsive (FAR1) family protein (.1) AT3G59470 139 / 3e-40 FAR1_related Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) AT2G43280 133 / 1e-38 FAR1_related Far-red impaired responsive (FAR1) family protein (.1) AT4G12850 106 / 2e-28 FAR1_related Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2), Far-red impaired responsive (FAR1) family protein (.3) AT4G38180 108 / 1e-26 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT5G18960 95 / 4e-22 FAR1_related FRS12 FAR1-related sequence 12 (.1) AT3G06250 94 / 1e-21 FAR1_related FRS7 FAR1-related sequence 7 (.1) AT3G22170 79 / 2e-16 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2) AT1G76320 79 / 2e-16 FAR1_related FRS4 FAR1-related sequence 4 (.1.2) AT2G32250 75 / 4e-15 FAR1_related FRS2 FAR1-related sequence 2 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G239300 [exp] 235 / 9e-78 AT2G43280 130 / 2e-37 Far-red impaired responsive (FAR1) family protein (.1) Potri.007G128700 [exp] 190 / 3e-60 AT3G07500 138 / 2e-40 Far-red impaired responsive (FAR1) family protein (.1) Potri.007G128800 [exp] 189 / 1e-59 AT3G07500 124 / 8e-35 Far-red impaired responsive (FAR1) family protein (.1) Potri.014G176500 [exp] 177 / 3e-55 AT3G07500 275 / 2e-94 Far-red impaired responsive (FAR1) family protein (.1) Potri.007G129500 [exp] 140 / 8e-41 AT3G59470 260 / 9e-88 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Potri.017G029100 [exp] 137 / 2e-39 AT3G59470 323 / 1e-112 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Potri.017G029400 [exp] 135 / 5e-39 AT2G43280 319 / 4e-112 Far-red impaired responsive (FAR1) family protein (.1) Potri.008G076800 [exp] 117 / 1e-31 AT3G59470 156 / 1e-46 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Potri.002G239400 [exp] 113 / 8e-31 AT4G12850 207 / 1e-68 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2), Far-red impaired responsive (FAR1) family protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020226 [exp] 91 / 2e-21 AT3G59470 120 / 7e-33 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Lus10026854 [exp] 89 / 1e-20 AT3G59470 121 / 1e-32 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Lus10026732 [exp] 53 / 1e-08 AT3G07500 88 / 2e-22 Far-red impaired responsive (FAR1) family protein (.1) Lus10025517 [exp] 46 / 1e-06 AT2G43280 87 / 1e-22 Far-red impaired responsive (FAR1) family protein (.1) Lus10023134 [exp] 42 / 4e-05 AT3G59470 92 / 1e-24 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03101 [poplar] [flax] FAR1 FAR1 DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.007G128900.1 pacid=42765465 polypeptide=Potri.007G128900.1.p locus=Potri.007G128900 ID=Potri.007G128900.1.v4.1 annot-version=v4.1 ATGATGGCAAGCACCTCTGGTGAACAATTTAATTCTAACAGAAATTATAGATGTTGGCTGGCTGAAACTTTTGATGACCAAGAAACAGCAGATGATGAAT TAGCTGGTAATCTTGATGGAAATGATAACATAATTCAGCAATCTATTCAAGATTTTCCAGTAAGTTTGGAGCCATTTGAACCATTTATCGGAATGGAGTT TGAATCAGCAGAGGATGCTAGGGAATTTTATGAGTTGTATGGCAGACGAATGGGCTTTACCATACGTAACAATCGTACACGTAGGTCACTCAAAGATAAC TCAATAATTGGTCGAGAGTTTGTTTGCTCAAAAGAAGGCTTTCGTGGAGGAAAGAGTCCAAAGGGAGAAAACAGAGTTTTTCAATCACGGCCAATCACAA GGGAGGGATGCAATGCAATGTTGAGGATAGCTGCAAAGGATGGAGGAAAATGGGTTATTTATGGTTTCATAAAAGAACACAATCATGATCTTAATCCTAG TAAAATACCACCTCGCCGCTCACACAGGATTGCATTTAGTGAGGATGAGAAAGATCTCAAAATCCGAGAGCTATCCACCGAGCTGCATCGAGAGAAAAAG AAATCTGCTGCTTATCAAAAGCAGCTACAGATGGTTTTAACATATATCGAGGAGCACACACAACGTTTATCACTTAAGGCTGAAGTTGTGGCTAACAAAG TGAAAGAACTTGAGTCTGAAGAGCCAGAAGATCCAGATTCTGACTAA
AA sequence Show only first row Show all	>Potri.007G128900.1 pacid=42765465 polypeptide=Potri.007G128900.1.p locus=Potri.007G128900 ID=Potri.007G128900.1.v4.1 annot-version=v4.1 MMASTSGEQFNSNRNYRCWLAETFDDQETADDELAGNLDGNDNIIQQSIQDFPVSLEPFEPFIGMEFESAEDAREFYELYGRRMGFTIRNNRTRRSLKDN SIIGREFVCSKEGFRGGKSPKGENRVFQSRPITREGCNAMLRIAAKDGGKWVIYGFIKEHNHDLNPSKIPPRRSHRIAFSEDEKDLKIRELSTELHREKK KSAAYQKQLQMVLTYIEEHTQRLSLKAEVVANKVKELESEEPEDPDSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07500	FAR1_related		Far-red impaired responsive (F...		Potri.007G128900 [exp]	0	1
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.004G205000 [exp]	4.24	0.7858
AT3G14470			NB-ARC domain-containing disea...		Potri.003G200200 [exp]	7.07	0.7803
AT3G07510			unknown protein		Potri.014G176000 [exp]	7.61	0.6909
AT4G12010			Disease resistance protein (TI...		Potri.019G097100 [exp]	8.24	0.8252
AT4G16860		RPP5, RPP4	recognition of peronospora par...		Potri.019G098800 [exp]	8.66	0.8200
AT1G45688			unknown protein		Potri.002G124600 [exp]	11.53	0.7906
AT5G17680			disease resistance protein (TI...		Potri.019G098500 [exp]	11.66	0.8160
AT1G31280		AGO2	argonaute 2, Argonaute family ...		Potri.012G118700 [exp]	13.26	0.7638
AT1G79910			Regulator of Vps4 activity in ...		Potri.003G054601 [exp]	13.85	0.7474
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.001G037000 [exp]	19.36	0.7682

Compare expression of checked genes

Potri.007G128900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.