Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43280 133 / 8e-40 FAR1_related Far-red impaired responsive (FAR1) family protein (.1) AT3G07500 119 / 4e-34 FAR1_related Far-red impaired responsive (FAR1) family protein (.1) AT3G59470 114 / 5e-32 FAR1_related Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) AT4G12850 109 / 4e-31 FAR1_related Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2), Far-red impaired responsive (FAR1) family protein (.3) AT4G38180 95 / 4e-23 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT3G06250 90 / 1e-21 FAR1_related FRS7 FAR1-related sequence 7 (.1) AT5G18960 87 / 2e-20 FAR1_related FRS12 FAR1-related sequence 12 (.1) AT4G15090 79 / 9e-18 FAR1_related FAR1 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) AT2G32250 78 / 2e-17 FAR1_related FRS2 FAR1-related sequence 2 (.1.2.3.4) AT3G22170 74 / 5e-16 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G029400 [exp] 139 / 7e-42 AT2G43280 319 / 4e-112 Far-red impaired responsive (FAR1) family protein (.1) Potri.014G176500 [exp] 130 / 2e-38 AT3G07500 275 / 2e-94 Far-red impaired responsive (FAR1) family protein (.1) Potri.002G239400 [exp] 120 / 1e-34 AT4G12850 207 / 1e-68 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2), Far-red impaired responsive (FAR1) family protein (.3) Potri.014G176600 [exp] 120 / 2e-34 AT4G12850 178 / 5e-57 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2), Far-red impaired responsive (FAR1) family protein (.3) Potri.011G145800 [exp] 111 / 4e-29 AT4G38180 1003 / 0.0 FAR1-related sequence 5 (.1) Potri.007G129500 [exp] 106 / 9e-29 AT3G59470 260 / 9e-88 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Potri.017G029100 [exp] 102 / 3e-27 AT3G59470 323 / 1e-112 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Potri.005G257600 [exp] 103 / 3e-26 AT4G38180 891 / 0.0 FAR1-related sequence 5 (.1) Potri.007G129101 [exp] 95 / 8e-26 AT2G43280 142 / 6e-44 Far-red impaired responsive (FAR1) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026854 [exp] 70 / 9e-15 AT3G59470 121 / 1e-32 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Lus10026732 [exp] 61 / 2e-12 AT3G07500 88 / 2e-22 Far-red impaired responsive (FAR1) family protein (.1) Lus10020226 [exp] 63 / 3e-12 AT3G59470 120 / 7e-33 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03101 [poplar] [flax] FAR1 FAR1 DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.007G129000.3 pacid=42766690 polypeptide=Potri.007G129000.3.p locus=Potri.007G129000 ID=Potri.007G129000.3.v4.1 annot-version=v4.1 ATGAACTTTATATCTGTTGAGCTCCATTTAATTGCTAAGCCTGTGGAGATTGAGACCCTCGTGGAAGACAAAATTGTGACAACAGAAAGTATTGTGGGAG GTGAAACTGGTGTTTGTGAAGTCGACACAAGCCAAGAACCATATGAAGGTATGGTATTTGAATCGGAAAATGCTGCCAGAGTTTTCTATGATGAATATGC TAAACAGGAAGGATTTCTTACTCGTATTGTATCATCCCGTAAGTCTGAGCATGATGGAACAATTATATCTCGTCGACTTGCTTGTAATAAAGAAGGATTT AATCTCAGCAGCCAAAAGACAGGGCAAGTTAAAATTAGAAAAAGAGAAAGCAAACGGGAGGGTTGTATGGCAATGATATTGGTGAAGAGAGAAAAGCTAG GGAAATGGGTGGTGACAAAGTTTACGAGGGAGCATAATCATCCACTAGTAATATCATCAAAAAAAGTCGACTAA
AA sequence Show only first row Show all	>Potri.007G129000.3 pacid=42766690 polypeptide=Potri.007G129000.3.p locus=Potri.007G129000 ID=Potri.007G129000.3.v4.1 annot-version=v4.1 MNFISVELHLIAKPVEIETLVEDKIVTTESIVGGETGVCEVDTSQEPYEGMVFESENAARVFYDEYAKQEGFLTRIVSSRKSEHDGTIISRRLACNKEGF NLSSQKTGQVKIRKRESKREGCMAMILVKREKLGKWVVTKFTREHNHPLVISSKKVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43280	FAR1_related		Far-red impaired responsive (F...		Potri.007G129000 [exp]	0	1
AT3G52620			unknown protein		Potri.006G211600 [exp]	3.00	0.7434
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G046200 [exp]	12.44	0.7538
AT1G29900		VEN3, CARB	VENOSA 3, carbamoyl phosphate ...		Potri.008G216501 [exp]	13.71	0.6817
AT2G30740			Protein kinase superfamily pro...		Potri.017G036501 [exp]	21.72	0.7601
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G020500 [exp]	27.49	0.7462
AT5G21990		OEP61, TPR7	tetratricopeptide repeat 7, ou...		Potri.005G156250 [exp]	36.46	0.7319
AT1G77680			Ribonuclease II/R family prote...		Potri.001G137401 [exp]	36.98	0.7498
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.005G183800 [exp]	43.87	0.7141
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Potri.001G292700 [exp]	52.61	0.6179
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Potri.009G045601 [exp]	54.58	0.7408

Compare expression of checked genes

Potri.007G129000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.