Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17300 872 / 0 ATNS1, NS1, OVA8 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT1G70980 460 / 2e-156 SYNC3, SYNC1 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT5G56680 442 / 2e-149 SYNC1ARATH, SYNC1, EMB2755 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT3G07420 324 / 5e-103 ATNS2, SYNC2_ARATH, NS2 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) AT4G26870 105 / 1e-23 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT1G68420 92 / 2e-22 Class II aaRS and biotin synthetases superfamily protein (.1) AT4G31180 96 / 9e-21 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) AT5G38750 55 / 7e-09 asparaginyl-tRNA synthetase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G028800 [exp] 1066 / 0 AT4G17300 888 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.006G153900 [exp] 469 / 5e-160 AT5G56680 929 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.018G070000 [exp] 443 / 5e-150 AT5G56680 931 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.002G249700 [exp] 326 / 5e-103 AT3G07420 654 / 0.0 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Potri.006G085400 [exp] 105 / 7e-24 AT4G31180 709 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007470 [exp] 896 / 0 AT4G17300 873 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10028945 [exp] 743 / 0 AT4G17300 740 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10032704 [exp] 457 / 2e-155 AT5G56680 907 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10012920 [exp] 391 / 3e-130 AT5G56680 799 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10038228 [exp] 241 / 9e-75 AT3G07420 353 / 7e-118 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Lus10025874 [exp] 244 / 2e-72 AT3G07420 604 / 0.0 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Lus10008180 [exp] 169 / 5e-49 AT5G56680 268 / 2e-87 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10018862 [exp] 118 / 5e-28 AT4G31180 667 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10028555 [exp] 115 / 2e-27 AT4G31180 606 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10028557 [exp] 63 / 1e-11 AT4G31180 235 / 8e-76 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [poplar] [flax] tRNA_synt_II PF00152 [poplar] [flax] tRNA-synt_2 tRNA synthetases class II (D, K and N) CL0021 [poplar] [flax] OB PF01336 [poplar] [flax] tRNA_anti-codon OB-fold nucleic acid binding domain
Representative CDS sequence Show only first row Show all	>Potri.007G129800.7 pacid=42766343 polypeptide=Potri.007G129800.7.p locus=Potri.007G129800 ID=Potri.007G129800.7.v4.1 annot-version=v4.1 ATGGCTATTGCTGCTTTAGGACCAGCTACTTCGCTCCGGTTAAACCCGGGGTCTACTCTTCGGTTGCTGTCTTTCTACCCCAAGTCAAACCCTAGTAACC TCCCTGAAATCCTCAAAACAATGACGAAACCTCATGCCATACCTCCAAAGTTCCACCATTTTTTTCAACTTTCAGGTTTGCCTCGCCGGAGGTTCTTCTG CAGTGTGATTTCTGGAGCTCTACAGTCTAACGAGAGTGCAAAAGTGGGATTTTTGGAGAAGGAGAAGAGTGAAGTGGGAAATAGAGTTGGAGAATTTAGA AAAAAGTTGAAGATTGCTGATATAAAGGGTGGTCCAGATGAAGGGTTGGATCGTGTAGGGAAGACCATTGTTGTGATGGGTTGGGTTCGTACTCTTCGTG TTCAGAGCAGTGTTACGTTTATTGAGGTTAATGATGGTTCATGCCTATCAAACATGCAATGTGTAATGGGATTGGAGGCTGAAGGTTATGATCAGGTAGA ATCTGGGTTGATAACAACTGGCGCATCAATATTGGTGCAAGGAACTGTGGTGGAGAGCCAAGGATCAAAACAGAAGGTGGAACTGAAGGTCAACAAAATT GTTTTGGTTGGCAAGAGTGATCCTTCCTATCCCATTCAAAAGAAAAGGGTCAGCAGAGAATTTTTGAGAACTAAAGCTCACCTTCGTCCTAGAACAAATA CATTTGGTGCGGTTGCAAGGGTGAGGAATGCTTTAGCATATGCCACTCACAAGTTTTTCCAAGAAAATGGGTTTGTTTGGGTCTCAAGTCCTATTATTAC AGCTTCAGATTGTGAAGGGGCCGGTGAGCAGTTCTGTGTGACTACTTTGATTCCAGGCTCTCAAGAAGTTGCTAATTCTCCGGTGGATAGGATTCCAAAA ACAAAGGATGGCTTAATTGATTGGTCACAAGACTTTTTTGGCAAACCAGCTTTTCTGACGGTCTCTGGCCAGCTCAATGCTGAAACATATGCCACTGCTC TTTCGGATGTGTATACATTTGGTCCCACATTTCGAGCTGAAAATTCTAATACTTCAAGGCATTTGGCTGAATTTTGGATGATTGAACCAGAACTTGCATT TGCTGATCTGACTGACGACATGGCCTGTGCCACTGCCTATCTCCAGTATGTAGTGAGACATATCCTTGAAAACTGCAAGGAAGACATGGAATTTTTCAAT ACTTGGATTGAGAAGGGAATCATTGATCGATTGACTGATGTGGCTGAGAAAGACTTTGTTCAGTTGACTTATACTGATGCAGTTGAACTTCTTCTGAAAG CAAAAAAGAAGTTTGAATTCCCGGTGGAATGGGGATGTGATTTGCAAAGTGAGCATGAGCGTTATATAACTGAAGAGGCATTTGGTGGGTGCCCCGTCAT AATCAGAGATTATCCAAAGGACATCAAAGCATTTTATATGCGGCAAAATGATGATGGGAAAACTGTCGCTGCTATGGACATGCTGGTTCCTCGGGTTGGT GAACTTATTGGTGGAAGCCAAAGAGAGGAACGGCTTGAATATCTAGAAGACCGTTTAGATGAGTTAAAGTTGAACAAGGAGAGCTTCTGGTGGTATCTTG ATTTGCGACGTTATGGTTCAGTTCCTCACGCGGGTTTCGGACTTGGTTTTGAGAGGCTTGTGCAATTTGCTACTGGATTAGAAAATATAAGAGATGCAAT TCCTTTCCCTCGGGTACCTGGTTCTGCGGAATTTTAA
AA sequence Show only first row Show all	>Potri.007G129800.7 pacid=42766343 polypeptide=Potri.007G129800.7.p locus=Potri.007G129800 ID=Potri.007G129800.7.v4.1 annot-version=v4.1 MAIAALGPATSLRLNPGSTLRLLSFYPKSNPSNLPEILKTMTKPHAIPPKFHHFFQLSGLPRRRFFCSVISGALQSNESAKVGFLEKEKSEVGNRVGEFR KKLKIADIKGGPDEGLDRVGKTIVVMGWVRTLRVQSSVTFIEVNDGSCLSNMQCVMGLEAEGYDQVESGLITTGASILVQGTVVESQGSKQKVELKVNKI VLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCEGAGEQFCVTTLIPGSQEVANSPVDRIPK TKDGLIDWSQDFFGKPAFLTVSGQLNAETYATALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLTDDMACATAYLQYVVRHILENCKEDMEFFN TWIEKGIIDRLTDVAEKDFVQLTYTDAVELLLKAKKKFEFPVEWGCDLQSEHERYITEEAFGGCPVIIRDYPKDIKAFYMRQNDDGKTVAAMDMLVPRVG ELIGGSQREERLEYLEDRLDELKLNKESFWWYLDLRRYGSVPHAGFGLGFERLVQFATGLENIRDAIPFPRVPGSAEF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Potri.007G129800 [exp]	0	1
AT5G02830			Tetratricopeptide repeat (TPR)...		Potri.006G132700 [exp]	1.41	0.9661
AT2G46915			Protein of unknown function (D...		Potri.002G183900 [exp]	1.73	0.9630
AT1G80030			Molecular chaperone Hsp40/DnaJ...		Potri.003G031800 [exp]	2.00	0.9630
AT1G78010			tRNA modification GTPase, puta...		Potri.002G092600 [exp]	4.00	0.9490
AT5G55580			Mitochondrial transcription te...		Potri.001G361800 [exp]	5.74	0.9523
AT4G31850		PGR3	proton gradient regulation 3 (...		Potri.006G264800 [exp]	6.00	0.9539
AT5G10690			pentatricopeptide (PPR) repeat...		Potri.006G273400 [exp]	9.64	0.9323
AT2G35500		SKL2	shikimate kinase-like 2, shiki...		Potri.003G096600 [exp]	11.40	0.9473
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Potri.008G204700 [exp]	12.08	0.9349
AT1G14030			Rubisco methyltransferase fami...		Potri.008G090500 [exp]	12.96	0.9595	RBCMT.1

Compare expression of checked genes

Potri.007G129800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.