Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30890 380 / 2e-134 Integral membrane HRF1 family protein (.1.2) AT3G59500 379 / 7e-134 Integral membrane HRF1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G028425 [exp] 419 / 1e-149 AT1G30890 402 / 3e-143 Integral membrane HRF1 family protein (.1.2) Potri.017G028500 [exp] 419 / 1e-149 AT1G30890 402 / 3e-143 Integral membrane HRF1 family protein (.1.2) Potri.014G175900 [exp] 334 / 2e-116 AT3G59500 378 / 5e-134 Integral membrane HRF1 family protein (.1) Potri.001G327700 [exp] 45 / 5e-06 AT1G30890 53 / 2e-09 Integral membrane HRF1 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027039 [exp] 398 / 2e-141 AT1G30890 469 / 2e-169 Integral membrane HRF1 family protein (.1.2) Lus10025577 [exp] 395 / 3e-140 AT1G30890 466 / 2e-168 Integral membrane HRF1 family protein (.1.2) Lus10008752 [exp] 338 / 5e-118 AT3G59500 392 / 4e-139 Integral membrane HRF1 family protein (.1) Lus10007418 [exp] 278 / 1e-94 AT1G30890 345 / 2e-121 Integral membrane HRF1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0112 [poplar] [flax] Yip1 PF03878 [poplar] [flax] YIF1 YIF1
Representative CDS sequence Show only first row Show all	>Potri.007G129900.1 pacid=42766733 polypeptide=Potri.007G129900.1.p locus=Potri.007G129900 ID=Potri.007G129900.1.v4.1 annot-version=v4.1 ATGTATAACAATGTGGGACCTCAGCCTGGGGTGCCAAGACCTCCGACCAACCCTCAGCCCACTCCATTTGGGAATGCCTTCTATGGAGCTGGCTCGGGAC TTATTAAAGGTGGACTGGGTGCATATGGAGAGAAAATTCTGGGATCGAGTTCTGAGTATGTGCAAAGCAATATAAGTAGATACTTCTCTGATCCACAATA CTATTTCCAAGTGAATGACCACTATGTGAGGAACAAATTGAAGGTTGTTCTGTTTCCTTTCCTGCACAGGGGACATTGGACAAGGATAACTGAGCCAGTA GGGGGCAGGCTTTCCTATAAACCCCCAATCTATGATATAAATGCACCAGACCTGTACATTCCGTTCATGGCATTTGGTACCTATGTTGTTCTTGCTGGCT TGTCATTGGGACTTAATGGAAAGTTTAGCCCAGAAGCTCTCAATTGGCTGTTTGTCAAGGGATTGCTTGGCTGGTTTATGCAGGTTGCATTACTCAAAAT AATACTCCTTTCATTGGGTAGTGGGGAGGCACCCTTGTTAGACATGGTTGCATATGCTGGGTATACTTTCACAGGCATGTGTTTTGCTGTACTTGGAAAG ATCTTACCTGGATACTCTTACTACATTTTGATGCCATGTACCTGCCTATGTATGGGAATTTTCTTGGTGAAGACAATGAAGAGAGTACTCTTTGCAGAGG TGAGGAGCGTTGATTCGAGCCGGCACCATTATCTCTTGCTCCTCATTGGTTTGGTTCAGTTCCCACTTTTTGCATGGCTTGGCAATGTTAGTGTTAATTG GTTTCTCTAA
AA sequence Show only first row Show all	>Potri.007G129900.1 pacid=42766733 polypeptide=Potri.007G129900.1.p locus=Potri.007G129900 ID=Potri.007G129900.1.v4.1 annot-version=v4.1 MYNNVGPQPGVPRPPTNPQPTPFGNAFYGAGSGLIKGGLGAYGEKILGSSSEYVQSNISRYFSDPQYYFQVNDHYVRNKLKVVLFPFLHRGHWTRITEPV GGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGLSLGLNGKFSPEALNWLFVKGLLGWFMQVALLKIILLSLGSGEAPLLDMVAYAGYTFTGMCFAVLGK ILPGYSYYILMPCTCLCMGIFLVKTMKRVLFAEVRSVDSSRHHYLLLLIGLVQFPLFAWLGNVSVNWFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30890			Integral membrane HRF1 family ...		Potri.007G129900 [exp]	0	1
AT5G58030			Transport protein particle (TR...		Potri.006G187300 [exp]	1.73	0.8113
AT3G04830			Protein prenylyltransferase su...		Potri.005G051300 [exp]	1.73	0.8487
AT5G46230			Protein of unknown function, D...		Potri.004G064700 [exp]	2.00	0.7897
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.001G374000 [exp]	2.44	0.8428	RAB11.4
AT5G53000		TAP46	2A phosphatase associated prot...		Potri.015G012200 [exp]	6.63	0.7243
AT5G04430		BTR1S, BTR1L, B...	BINDING TO TOMV RNA 1S \(SHORT...		Potri.010G230500 [exp]	8.77	0.7587
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Potri.010G205700 [exp]	10.09	0.7083	Pt-HSP70.5
AT5G06660			Protein of unknown function DU...		Potri.016G060300 [exp]	13.67	0.7416
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Potri.002G252600 [exp]	15.71	0.7401	Pt-RPT2.2
AT4G21105			cytochrome-c oxidases;electron...		Potri.001G460200 [exp]	16.30	0.7318

Compare expression of checked genes

Potri.007G129900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.