Plant FIBer expression Database

Potri.007G130200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.007G130200.2 pacid=42766409 polypeptide=Potri.007G130200.2.p locus=Potri.007G130200 ID=Potri.007G130200.2.v4.1 annot-version=v4.1
ATGACGAACACTGAGGTCTGTCCAGTCGTGGCATCCAGCTTGTCCGGCCATGGAAGACAGCATTCTCTCCGCCAGTTTTCTGATACCTGGGAAGACAGTT
ATGAGAGCAATTATCGCAATGCAAGGCGTGCGTTTCTAAGCAGCTACCATTTCTCAGAAGAAAATGGCATCAGGGACAAGCTGAGGAGGTCTGTGAAGGA
GATCAACGAGGTTGTCAGAGGAGTTGTTTCGGACATCCGTGAAGAGATTTGTAAGAGAAGGATTCGCATCAAAGTTTGCAGGTTCTCTTTGGGGTTGCCA
TGTTTGATTCTTTCTAGTGTAAGATGTTTTGCGCCCTGGATTGGAAGGAGGAGAGAGTTGATGCAGTGA
AA sequence
>Potri.007G130200.2 pacid=42766409 polypeptide=Potri.007G130200.2.p locus=Potri.007G130200 ID=Potri.007G130200.2.v4.1 annot-version=v4.1
MTNTEVCPVVASSLSGHGRQHSLRQFSDTWEDSYESNYRNARRAFLSSYHFSEENGIRDKLRRSVKEINEVVRGVVSDIREEICKRRIRIKVCRFSLGLP
CLILSSVRCFAPWIGRRRELMQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G43390 unknown protein Potri.007G130200
[exp]
0 1
AT1G22360 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 ... Potri.016G021100
[exp]
1.41 0.9811
AT5G39110 RmlC-like cupins superfamily p... Potri.013G052300
[exp]
2.82 0.9770
AT1G22370 ATUGT85A5 UDP-glucosyl transferase 85A5 ... Potri.016G021600
[exp]
3.00 0.9766
AT1G05260 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Pe... Potri.007G122100
[exp]
3.87 0.9668 SEPA1.1
AT3G24020 Disease resistance-responsive ... Potri.003G174300
[exp]
4.24 0.9722
AT5G13900 Bifunctional inhibitor/lipid-t... Potri.013G131500
[exp]
4.79 0.9590
AT1G68850 Peroxidase superfamily protein... Potri.008G110600
[exp]
5.29 0.9760
AT5G39110 RmlC-like cupins superfamily p... Potri.013G051901
[exp]
5.91 0.9706
AT2G27370 CASP3 Casparian strip membrane domai... Potri.009G160000
[exp]
6.24 0.9694
AT5G39110 RmlC-like cupins superfamily p... Potri.013G052000
[exp]
6.32 0.9703

Potri.007G130200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.