Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06050 390 / 1e-136 Protein of unknown function (DUF1336) (.1) AT5G10750 243 / 4e-79 Protein of unknown function (DUF1336) (.1) AT5G24990 199 / 5e-62 Protein of unknown function (DUF1336) (.1) AT5G25010 196 / 4e-61 Protein of unknown function (DUF1336) (.1) AT5G35180 187 / 1e-53 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) AT5G45560 171 / 8e-48 Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein (.1) AT4G19040 169 / 2e-47 EDR2 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) AT5G25020 160 / 2e-47 Protein of unknown function (DUF1336) (.1) AT2G28320 163 / 5e-45 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) AT3G54800 160 / 4e-44 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G027700 [exp] 552 / 0 AT1G06050 399 / 4e-140 Protein of unknown function (DUF1336) (.1) Potri.018G014234 [exp] 234 / 1e-75 AT5G10750 428 / 5e-152 Protein of unknown function (DUF1336) (.1) Potri.018G113100 [exp] 184 / 2e-52 AT5G35180 1028 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Potri.008G213000 [exp] 173 / 9e-49 AT4G19040 1017 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.003G100600 [exp] 172 / 2e-48 AT4G19040 1182 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.001G132900 [exp] 172 / 3e-48 AT4G19040 1159 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.010G223400 [exp] 169 / 2e-47 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.008G038800 [exp] 169 / 3e-47 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.009G011200 [exp] 165 / 7e-46 AT2G28320 1071 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008154 [exp] 422 / 7e-150 AT1G06050 362 / 5e-126 Protein of unknown function (DUF1336) (.1) Lus10026242 [exp] 224 / 3e-71 AT5G10750 440 / 1e-156 Protein of unknown function (DUF1336) (.1) Lus10042428 [exp] 222 / 1e-70 AT5G10750 444 / 6e-158 Protein of unknown function (DUF1336) (.1) Lus10026907 [exp] 209 / 3e-66 AT5G10750 416 / 1e-147 Protein of unknown function (DUF1336) (.1) Lus10005308 [exp] 197 / 4e-61 AT1G06050 191 / 3e-59 Protein of unknown function (DUF1336) (.1) Lus10040015 [exp] 192 / 2e-55 AT5G35180 1034 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019591 [exp] 186 / 2e-53 AT5G35180 931 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019068 [exp] 178 / 3e-51 AT5G35180 589 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10007596 [exp] 168 / 6e-47 AT4G19040 1217 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10012149 [exp] 168 / 9e-47 AT4G19040 1227 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07059 [poplar] [flax] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Potri.007G130400.1 pacid=42766738 polypeptide=Potri.007G130400.1.p locus=Potri.007G130400 ID=Potri.007G130400.1.v4.1 annot-version=v4.1 ATGGCTATCCCTGGTGATAGTGAGCATCAATGGATAGAGAGGGTAAAATCAGAGGGAGCTGTTCCACTACTTGATCCATATAATTGTTCAAATGGCTGGG CGTCTCCACCTGGAGAATGTTTCATGGTAAGAGGTCCAAAGTATGTGACAACTAAGGTTAAAATCCCTGGTGGTGAATCTCTTTTAAAGCCTCTTGGATT TGACTGGATCAAAGGTTCTACAAAGATTACAGAGGTTCTAAAGAATCGTAAAAGCCGTGTAAGGAAGGTTATTGATGAAGCTTTTCCAAATGGTGATAAG CCTTTTGTTTGGGCGTTTAATCTACAAGTTCCCGGTAAGGAAAACTATAGTGCTGTGGCTTATTTCGTAGGCACAGAACCAATTCCAGAGGGATCTTTAA TGGACCAGTTCTTGAAAGGTGATGACGGGTTTAGAAACTCAAGGCTTAAACTGATTGCCAACATTGTCAAAGGTCCCTGGATAGTAAGAAAGGCAGTTGG AGAGCAGGCTGTGTGCATAATTGGGCGTACCCTTTCCTGCAAGTACTGTTTCGATGAACATTTTTTGGAAGTTGATGTGGATATTGGATCTTCAATGGTT GCAAGTGCAATAGTTCATTTGGCATTTGGTTACATCTCAATGTTGACTGTTGACCTAGCTTTTGTCATTGAGGGTCAAAGCGAGTCAGAGCTTCCAGAAC AACTCTTAGGTGCCTTGAGATTTTCCGACTTAAATCCTGCTTGTGCTTCCTTATATGAGCCGTCACCTCTTGGAAGCACTGATAATTTGCAGTCTTCATT GCCGACACGCTTATGGAAGTCAATTGGCCAGGGATTTTCTCAGCTCCTTCATCCCGTACCAGGTGCCCAAGAAAATGGTTCTACCTTTGACACAGCCCAT GTTAATGGAACTTCTGAGCTAAAAGAGGGCTGTGAAGACTCAAAGAAATGA
AA sequence Show only first row Show all	>Potri.007G130400.1 pacid=42766738 polypeptide=Potri.007G130400.1.p locus=Potri.007G130400 ID=Potri.007G130400.1.v4.1 annot-version=v4.1 MAIPGDSEHQWIERVKSEGAVPLLDPYNCSNGWASPPGECFMVRGPKYVTTKVKIPGGESLLKPLGFDWIKGSTKITEVLKNRKSRVRKVIDEAFPNGDK PFVWAFNLQVPGKENYSAVAYFVGTEPIPEGSLMDQFLKGDDGFRNSRLKLIANIVKGPWIVRKAVGEQAVCIIGRTLSCKYCFDEHFLEVDVDIGSSMV ASAIVHLAFGYISMLTVDLAFVIEGQSESELPEQLLGALRFSDLNPACASLYEPSPLGSTDNLQSSLPTRLWKSIGQGFSQLLHPVPGAQENGSTFDTAH VNGTSELKEGCEDSKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06050			Protein of unknown function (D...		Potri.007G130400 [exp]	0	1
AT1G02305			Cysteine proteinases superfami...		Potri.002G184201 [exp]	1.41	0.9577
AT1G76520			Auxin efflux carrier family pr...		Potri.001G456400 [exp]	2.82	0.9493
AT5G43260			chaperone protein dnaJ-related...		Potri.001G056601 [exp]	5.09	0.9354
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.002G121400 [exp]	6.00	0.9229	Pt-IFS1.51
AT2G46870	B3	NGA1	NGATHA1, AP2/B3-like transcrip...		Potri.011G149700 [exp]	6.92	0.9518
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Potri.013G054000 [exp]	8.77	0.9381
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Potri.008G041400 [exp]	10.58	0.9545	Pt-MLO12.2
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Potri.009G054800 [exp]	11.22	0.9319
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.008G026700 [exp]	11.66	0.9418	PtrProT5
AT1G61720		BAN	BANYULS, NAD(P)-binding Rossma...		Potri.011G031700 [exp]	12.00	0.9333	ANR/BAN2,Pt-BAN.1

Compare expression of checked genes

Potri.007G130400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.