Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59530 661 / 0 LAP3 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT1G08470 324 / 2e-108 SSL3 strictosidine synthase-like 3 (.1) AT5G22020 318 / 3e-106 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G57030 302 / 4e-100 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G57020 255 / 1e-81 Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT2G41300 248 / 9e-79 SSL1 strictosidine synthase-like 1 (.1) AT3G57010 246 / 4e-78 Calcium-dependent phosphotriesterase superfamily protein (.1) AT2G41290 224 / 2e-69 SSL2 strictosidine synthase-like 2 (.1) AT1G74020 177 / 5e-52 SS2 strictosidine synthase 2 (.1) AT1G74010 156 / 4e-44 Calcium-dependent phosphotriesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G027600 [exp] 776 / 0 AT3G59530 640 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.001G214500 [exp] 320 / 7e-107 AT1G08470 628 / 0.0 strictosidine synthase-like 3 (.1) Potri.016G037900 [exp] 305 / 5e-101 AT3G57030 523 / 0.0 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.006G040900 [exp] 300 / 4e-99 AT2G41290 381 / 4e-131 strictosidine synthase-like 2 (.1) Potri.016G037700 [exp] 283 / 3e-92 AT2G41290 402 / 3e-139 strictosidine synthase-like 2 (.1) Potri.T015518 [exp] 234 / 1e-73 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.008G109966 [exp] 234 / 1e-73 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.012G046200 [exp] 163 / 7e-47 AT1G74000 206 / 2e-64 strictosidine synthase 3 (.1) Potri.015G037700 [exp] 162 / 3e-46 AT1G74000 218 / 7e-69 strictosidine synthase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008151 [exp] 664 / 0 AT3G59530 613 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Lus10019377 [exp] 657 / 0 AT3G59530 609 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Lus10008451 [exp] 311 / 3e-103 AT1G08470 600 / 0.0 strictosidine synthase-like 3 (.1) Lus10013370 [exp] 276 / 1e-89 AT1G08470 520 / 0.0 strictosidine synthase-like 3 (.1) Lus10012095 [exp] 226 / 2e-70 AT2G41290 291 / 2e-96 strictosidine synthase-like 2 (.1) Lus10034411 [exp] 181 / 4e-54 AT3G57030 232 / 1e-74 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10006331 [exp] 166 / 6e-48 AT3G57030 239 / 1e-76 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10029599 [exp] 161 / 3e-46 AT3G57030 204 / 3e-63 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10006330 [exp] 159 / 3e-45 AT3G57030 224 / 2e-70 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10009014 [exp] 161 / 1e-43 AT1G74020 201 / 8e-59 strictosidine synthase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF08450 [poplar] [flax] SGL SMP-30/Gluconolactonase/LRE-like region
Representative CDS sequence Show only first row Show all	>Potri.007G130700.1 pacid=42765768 polypeptide=Potri.007G130700.1.p locus=Potri.007G130700 ID=Potri.007G130700.1.v4.1 annot-version=v4.1 ATGGAGAAGAAAGGATCACAAAGAGATGCGACCTTGTTGCAGCATCCAATTCTCCTTGTACTTGCTTTAGCTATAGGTTTTGTTATAATGGATCCGTTTA AAATGGGACCTTTGGGACACCATGATTTCAAGCCTGTCAAGCATGACCTTGCACCTTACAAGCAAGTCATGGAAAACTGGCCTAGGGACAATAAAAGCAG ATTAGGGTCCGGGAATTTGGAGTTTGTCAATGAAGTTTTCGGCCCTGAATCGTTGGAGTTCGACAGCCTGGGGCGAGGCCCTTATGCTGGGTTGGCTGAT GGACGTGTTGTGAGATGGATGGGAGAGGATGTTGGATGGGAAACATTTGCTCTTGTTTCCACAAACTGGTCAGAGAAACTTTGTGCTAGGGGAGTTGACT CAACCACATCTAAGCAATGGAAGCATGAGAAACTGTGTGGTCGTCCATTAGGTCTGAGGTTCCACAAAGAGAGTGGAAATTTGTACATTGCTGATGCTTA TTATGGCCTTCTGGTTGTTGGACCTGAAGGAGGACTTGCTACTCCTTTGGCCACTCATGTGAGAGGGGAACCAATACTCTTTGCAAATGACCTTGACATT CACAAGAATGGATCCATCTTCTTTACTGACACCAGCAAAAGATACGATAGAGTGGACCATTTCTTCATATTGTTGGAAGGAGAATCCACTGGTAGGCTTC TCAGATATGACCCTCCTACCAAAACGACTCACATTGTATTGGATGGCTTAGCATTTCCAAATGGAGTTCAGCTATCTAAGGATCAAACTTTCCTGGTCTT CACTGAGACCACCAATTGCAGAATAATGAAATACTGGCTAGAAGGACCGAAAACCGGAAAGGTGGAACTTGTTGCGAACTTGCCTGGCTTTCCAGACAAT GTAAGATTGAATGAAAAAGGCCAATTCTGGGTTGCAATAGATTGTTGCAGGACAGCAGCACAAGAGATTCTTACACACAATCCATGGGTGAAGAGTGTCT ATTTCCGGTTACCAATCCGTATGAGGTACTTAGCGTGGCTGATGGGCATGAAGATGTACACAGTTGTTTCCCTCTTCAATGAGAACGGAGAAATCTTGGA AGTTCTTGAGGATCCGAAGGGTGTAGTAATGAAGCTAGTGAGTGAAGTTAGAGAAGTAGAAGGGAAGCTGTGGATTGGAACTGTAGCTCATAACCATATT GCTACCCTTCCTTATCCCTAG
AA sequence Show only first row Show all	>Potri.007G130700.1 pacid=42765768 polypeptide=Potri.007G130700.1.p locus=Potri.007G130700 ID=Potri.007G130700.1.v4.1 annot-version=v4.1 MEKKGSQRDATLLQHPILLVLALAIGFVIMDPFKMGPLGHHDFKPVKHDLAPYKQVMENWPRDNKSRLGSGNLEFVNEVFGPESLEFDSLGRGPYAGLAD GRVVRWMGEDVGWETFALVSTNWSEKLCARGVDSTTSKQWKHEKLCGRPLGLRFHKESGNLYIADAYYGLLVVGPEGGLATPLATHVRGEPILFANDLDI HKNGSIFFTDTSKRYDRVDHFFILLEGESTGRLLRYDPPTKTTHIVLDGLAFPNGVQLSKDQTFLVFTETTNCRIMKYWLEGPKTGKVELVANLPGFPDN VRLNEKGQFWVAIDCCRTAAQEILTHNPWVKSVYFRLPIRMRYLAWLMGMKMYTVVSLFNENGEILEVLEDPKGVVMKLVSEVREVEGKLWIGTVAHNHI ATLPYP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59530		LAP3	LESS ADHERENT POLLEN 3, Calciu...		Potri.007G130700 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.008G034200 [exp]	2.82	0.9683
					Potri.001G320601 [exp]	2.82	0.9703
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.001G469000 [exp]	7.00	0.9551
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Potri.019G123800 [exp]	7.07	0.9498
					Potri.013G062100 [exp]	7.41	0.9480
AT5G26810			Pectin lyase-like superfamily ...		Potri.013G008100 [exp]	7.74	0.9581
AT5G53040		GRD, RKD4	RWP-RK domain-containing 4, GR...		Potri.012G016800 [exp]	16.24	0.9292
AT2G01340		At17.1	unknown protein		Potri.004G088200 [exp]	16.70	0.9529
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.013G112100 [exp]	17.97	0.9442
AT4G31980			unknown protein		Potri.003G206201 [exp]	18.33	0.9578

Compare expression of checked genes

Potri.007G130700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.