Plant FIBer expression Database

Potri.007G130900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G06110 557 / 0 SKIP16 SKP1/ASK-interacting protein 16 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G027000
[exp]
764 / 0 AT1G06110 545 / 0.0 SKP1/ASK-interacting protein 16 (.1)
Potri.015G078100
[exp]
54 / 5e-08 AT1G06110 48 / 3e-06 SKP1/ASK-interacting protein 16 (.1)
Potri.012G082300
[exp]
52 / 4e-07 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004805
[exp]
606 / 0 AT1G06110 542 / 0.0 SKP1/ASK-interacting protein 16 (.1)
Lus10027693
[exp]
59 / 3e-09 AT1G06110 49 / 2e-06 SKP1/ASK-interacting protein 16 (.1)
Lus10039964
[exp]
57 / 2e-08 AT5G62960 247 / 7e-78 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0159 E-set PF04379 DUF525 ApaG domain
Representative CDS sequence
>Potri.007G130900.2 pacid=42764956 polypeptide=Potri.007G130900.2.p locus=Potri.007G130900 ID=Potri.007G130900.2.v4.1 annot-version=v4.1
ATGGGGCTGGAATCAGTGGGAGATCTAGCTCTGAACATAATCTTAACAAAACTTGGTCCAAAAGAGACAGTACAAGTACTATGTGTCAGCAAAAAGTTCA
AGGATTTAGCTTCAGAGGAATCTCTCTGGTCATTATTTTGCCGTCAAGATCTTGATCTTTCTGCTCCTCTTGACCATCATGGAAATCATCTGCCTTCTTT
TAAGGCAACTTATAAGTTATGGAGAGAAGCCTTTCATATGTATCCTTGGCCCCTTGTAAAGCGAGTTAAAAGTTGTTGGGACAGACTCACGAGCTGGTTG
ACCGCGAACTTTCCTGAAGTTAAGGCTACCCTAGGAAAGGGTGCATCAGAAGGTGAGATTCAAAAGTTGGAAAGAATTTTGAAAGTTAAGTTGCCTCTTC
CCACAAGACTTCTCTACCGCTTTCATGATGGTCAACATTTCTCAGACAAAAATCTGTCAGGTGGCATGGCTGGTTGTCCATTGGGCCTGATAGGTGGCTA
CTGTTTTTATAATCACTCGGTTAATGTCTACTTATTATCACTACATGAGGTAATCTCTAAAACGCAGGAAATAGTGCGGCACCTGAACTTACCCGATACA
TCCGAGTATATTGTTGTGGCTGCTTCATCCTCATACGTTGGAAAGTTTTTCTTCCTGAACTGTTCTGATGGCCAACTCTATGTTGGGACCCAGAATTTTC
CAACAGATGCAGAAATGATGCCATGTGTACCTCAGGCATTGATTAGTCCAGTCCATGATTTCAACAGTGACCAACAACAGGATGCTATGTTGTTATGGTT
AGAAGAACATGGCCGTCGCTTGCACAATGGCATGATCAAAATTCTCGGCAAAGGAAATATTAAAAGCATCTCTCAGTTTCCAGAAGAATCTCCTCTCTGT
TCAACTGCTGTAACCAGTGGTGTAAAGGTTCGTGCTTCTGCTGTTTTTGTGCCAGAGGCTGCTGATCTGGAAGATATTTCTACAAAATACGTGTTCGCTT
ATTCAATCCGCATGTCCCTTCTACCAGAAGGATGCATCATCAACGGAATGCACTTCAGCTCTTGCCAACTGCACCTGAGGCACTGGGTTATCAGTGCTAA
TGATACTGCTGTATCTAATGTCAATGCAGAGGCTGTGATAGGCAAGTTCCCACTCTTGTTTCCAGGCGAGAAAGAATTTGTTTATGAGAGTTGTACACCT
CTGCCAACTTCTACTGGCTCTGTTGAAGGTTCTTTCACATTTGTCCCTGGCAGATTGGCAGATCCAAAAGGAATTCCATTTGAAGTTGAAGTCGGTCGGT
TTCCGCTCCAACTGCCAGACTACATTTTCTGA
AA sequence
>Potri.007G130900.2 pacid=42764956 polypeptide=Potri.007G130900.2.p locus=Potri.007G130900 ID=Potri.007G130900.2.v4.1 annot-version=v4.1
MGLESVGDLALNIILTKLGPKETVQVLCVSKKFKDLASEESLWSLFCRQDLDLSAPLDHHGNHLPSFKATYKLWREAFHMYPWPLVKRVKSCWDRLTSWL
TANFPEVKATLGKGASEGEIQKLERILKVKLPLPTRLLYRFHDGQHFSDKNLSGGMAGCPLGLIGGYCFYNHSVNVYLLSLHEVISKTQEIVRHLNLPDT
SEYIVVAASSSYVGKFFFLNCSDGQLYVGTQNFPTDAEMMPCVPQALISPVHDFNSDQQQDAMLLWLEEHGRRLHNGMIKILGKGNIKSISQFPEESPLC
STAVTSGVKVRASAVFVPEAADLEDISTKYVFAYSIRMSLLPEGCIINGMHFSSCQLHLRHWVISANDTAVSNVNAEAVIGKFPLLFPGEKEFVYESCTP
LPTSTGSVEGSFTFVPGRLADPKGIPFEVEVGRFPLQLPDYIF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G06110 SKIP16 SKP1/ASK-interacting protein 1... Potri.007G130900
[exp]
0 1
AT4G10100 CNX7, SIR5 "co-factor for nitrate, reduct... Potri.019G070801
[exp]
2.82 0.7390
AT1G23750 Nucleic acid-binding, OB-fold-... Potri.008G189900
[exp]
6.63 0.7404
AT3G02700 NC domain-containing protein-r... Potri.004G078700
[exp]
8.66 0.7156
AT2G43070 ATSPPL3 ARABIDOPSIS THALIANA SIGNAL PE... Potri.002G232200
[exp]
10.95 0.6822
AT3G46450 SEC14 cytosolic factor family ... Potri.009G028700
[exp]
25.37 0.6163
AT4G36195 Serine carboxypeptidase S28 fa... Potri.007G015300
[exp]
28.77 0.6310
AT4G24130 Protein of unknown function, D... Potri.003G146400
[exp]
32.61 0.6988
AT3G14910 unknown protein Potri.001G390700
[exp]
33.58 0.6580
AT1G19310 RING/U-box superfamily protein... Potri.002G133000
[exp]
38.96 0.7019
AT5G58575 unknown protein Potri.001G279700
[exp]
49.41 0.6456

Potri.007G130900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.