Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43410 633 / 0 FPA RNA binding (.1.2.3.4) AT4G12640 152 / 1e-37 RNA recognition motif (RRM)-containing protein (.1) AT2G23350 81 / 2e-15 PABP4, PAB4 poly(A) binding protein 4 (.1) AT2G36660 77 / 2e-14 PAB7 poly(A) binding protein 7 (.1) AT1G22760 77 / 5e-14 PAB3 poly(A) binding protein 3 (.1) AT5G07290 76 / 8e-14 AML4 MEI2-like 4 (.1) AT2G42890 75 / 2e-13 AML2, MEI2 MEI2-like 2 (.1.2.3) AT1G34140 69 / 4e-12 PAB1 poly(A) binding protein 1 (.1) AT3G52150 67 / 4e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G71770 70 / 5e-12 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G026600 [exp] 1458 / 0 AT2G43410 659 / 0.0 RNA binding (.1.2.3.4) Potri.014G171900 [exp] 158 / 2e-39 AT4G12640 698 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Potri.001G304000 [exp] 79 / 8e-15 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.002G062700 [exp] 72 / 1e-12 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1) Potri.007G028300 [exp] 67 / 1e-11 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G069000 [exp] 65 / 1e-10 AT1G17370 621 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.015G086500 [exp] 64 / 1e-10 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.014G025400 [exp] 64 / 3e-10 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.009G105300 [exp] 63 / 5e-10 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019359 [exp] 857 / 0 AT2G43410 624 / 0.0 RNA binding (.1.2.3.4) Lus10007419 [exp] 806 / 0 AT2G43410 627 / 0.0 RNA binding (.1.2.3.4) Lus10025188 [exp] 149 / 2e-36 AT4G12640 567 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Lus10016070 [exp] 148 / 4e-36 AT4G12640 554 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Lus10010370 [exp] 88 / 2e-17 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010042 [exp] 85 / 1e-16 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10041728 [exp] 66 / 8e-11 AT2G18510 436 / 1e-153 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10002835 [exp] 66 / 1e-10 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 65 / 3e-10 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010202 [exp] 64 / 7e-10 AT3G18610 218 / 9e-60 PARALLEL1-LIKE 1, nucleolin like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0616 [poplar] [flax] SPOC PF07744 [poplar] [flax] SPOC SPOC domain CL0221 [poplar] [flax] RRM PF13893 [poplar] [flax] RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.007G131100.5 pacid=42765932 polypeptide=Potri.007G131100.5.p locus=Potri.007G131100 ID=Potri.007G131100.5.v4.1 annot-version=v4.1 ATGGCGCCGGATCCGATTAAATCAAACAAACCGGGAATTATAAAATCAGAGACAGACCAGAAAGACTCAATGAAAGAGAGAGAATCGAATAATTTATGGG TAGGGAACATATCAAGAGATGTAACAGAATCAGATCTAATGAAATTGTTTGCGCAATACGGTTCGATTGATAATGTAACGACGTATACAGCAAGAAGTTA TGGGTTTGTTTACTTTAAACGTGTTGAAGATGCTAAACAAGCTAAAGATGCCTTACAAGGGACTTCTCTTCGTGGAAATCAGATTATAATCGAGTTTGCT AGACCGGCCAAACCTAGTAGGCATCTATGGGTGGGTGGAATAGGCTCATCAGTTTCTGAGGAATGGCTGGAAGAAGAGTTTCTCAAGTTCGGTAAAATTG AGGATTTCAAGTTTCGTAGAGATCAAAATACTGCATATGTTGAGTATTTCAAACTGGAAGATGCTTCCCAAGCCATGAAAAACATGAATGGAAAGAAAAT TGGTGGTGATCAGTTACGTGTGGATTTCCTTCGAACACAATCCTCAAGAAGAGAACAATTACCCGACTTTCATGATTCAAGACAGGATCAGTTTTCAGCA ACACATTATGGAGTAAGACGACCTCAGATACCTAAATCTCCAGGGGAGCGGAAAGATGGCCAACCCAGCAATATTTTGTGGATAGGATATCCTCCTTCTG TGCGGATTGATGAACAAATGATACATAATGCCATGATTCTTTTTGGTGAGATTGAGAAAATTAAAAGCTTTCCTTCGAGGCATTATTCATTTGTGGAATT TAGAAGTGTTGATGAAGCCCGGCGTGCCAAAGAAGGCTTGCAAGGGCGGCTTTTCTGTGATCCTCGTATCACAATTACGTTCTCAAGTAGTGGACTGGCA CCTGGGAAAGAGGACTCTGCTTTTTATCCTGGAGTTGAAGGTCGTAGGCTGGAAATGTTTAACAAACATTCTTTTGCGCCTATGGACATCATGTTTGATC AACCTGGTGGGCCAAGAAATTTTCCTGGTCCATTTCCACCCAGTGGCATTCATAGACCGAACCTGCCAGTATGGCCTTTTGGTCCTCAAGGTGTTTTTGA CCCTATACTTCAAGGTGGAGAACATAATGATTTGGCTCCATCACATAGCGACCGAGATCCTGCATCTGGGATCCTCCCTTCTCCTGCTTCAGGTATCAGG CCACCCATGAGGTCAATTTCTAGTGGTTGGGATGTGCTTGATCCAAGCCAGTTTCCTAGGGACGCCAAGCGGTCAAGGATTGATTCTGCACCGTCTGTTG ATGATGATTCTTTTCCTGCTAGAAAGATGGGTGATCGTGATTTGGGTTTGGACAAAGCATATGGGCTAGGTCCTAGAGGTGCATATCCAAGTTTCCAGGG GAATAATAGTCTTAGTCCAGTTGGTGGTAGGCTTAAGGGTCATTTTGATGATGATTTCATATGGCGTGGGATTGTGGCCAAGGGTGGAATGCCTGTATGC CATGCCCGTTGTGTCCCTGTAGGAAAAGGGATAGAATCAGAGATACCTCCTGTCATAAATTGCTCGGCAAGGACAGGGCTGGATGTGCTGGCTAAACACT ATGCTGAGGCAATTGGGTTTGACATTGTTTTCTTCTTACCAGATAGTGAGGATGATTTTGCTTCCTATACGGAATTTTTGCATTACTTGGGTTCGAAGAA TCGAGCTGGTGTAGCAAAGTTTGATGATGGGACCACTCTATTTCTCGTGCCCCCATCAGATTTCTTAAAGAATGTGTTGAAAGTTGCAGGACCTGAACGC CTGTATGGTGTAGTACTCAAGTTGCCGCAGCAGGCCCCTAACAATAAATCAATGCAGCAACAATTGCCTCAGCCCATCCATTTTTCTCAGTACACGAACA ATCAGATTTCACCACCAGAAGCTGACTATAATTTGCTCCATCAGCAGGAGGAGCAAGTGATGTCAATCCATCATAATAGGGTTTTGCATGAGGATTCAAA GCTTCCTTCAAAACCAATTTATCCGTTGACAACAGTGTCCCACGCAGTGCTGCCAGTCCCCCAAGAATATGCCTCAAATCACAGTGCAGCACCGTCCTCT GCTGGATTTTTGACACCTGATCTTATTGCTACTCTTTCAACTTTACTGCCTGCCAATAAGCAGTCTAGTTCAGAAAGTAACCAACCAGAATTGGGCTCTC CTATTGTCAGGCCACCGTTTTCTTCAGTTATCCCTGACAAAGGAACTTCCTCTCAGGGATGGAAGCATGATAATCAAGTTTCTGGAAATACAAGTCATTT ACAATTTGGGAACCACTTGAATTATCAGTTGCAGGTTCAGTCTCAGTTCCAGCCTAGCCCATCTGTCCCCAGCACATATAGTCATTCAACAAATGTGGTC CCTAGAAACAGTCAAATCCAAGATTCTACTGTCAGCCTATCTCATCAGAGTGCAACTCCATCCAGGCCATTGACTAGCTTTTCCATGCCTTCTCAAAGTG GACAGTTTGCTTTGTCTCCACAGGTCAGCCAGCAAAATCTGTTCGAAGTTCCTCATAGCACTCAGAAAGGCTATGGGGTGGTCCATGGAACATATGTTAT GGAGCCGTACAGTCCATCAGTTATTCAGAAACCTAATGATACTGATACCTTGTTTTGTCAGGTTCAGGGCACAAATTTTTCCCAGACCCAATCTGGGATC CCACCATCTGCAGACAGAGGGAATGGGGAGCTTCCCAGTCAAGTGCAGCAATTCCAACCTGCTCTTTCTGTATCTGGGCGGGGTATCTCAGAGGCTGATA AGAATCAGAGATACCAGTCAACGCTGCAGTTTGCAGCCAACCTCCTGCTCCAGCTACAGCAGCAGCAGAATACCAGCAACCCTGATGCACATGGATCTGG GAATCAGCAATGA
AA sequence Show only first row Show all	>Potri.007G131100.5 pacid=42765932 polypeptide=Potri.007G131100.5.p locus=Potri.007G131100 ID=Potri.007G131100.5.v4.1 annot-version=v4.1 MAPDPIKSNKPGIIKSETDQKDSMKERESNNLWVGNISRDVTESDLMKLFAQYGSIDNVTTYTARSYGFVYFKRVEDAKQAKDALQGTSLRGNQIIIEFA RPAKPSRHLWVGGIGSSVSEEWLEEEFLKFGKIEDFKFRRDQNTAYVEYFKLEDASQAMKNMNGKKIGGDQLRVDFLRTQSSRREQLPDFHDSRQDQFSA THYGVRRPQIPKSPGERKDGQPSNILWIGYPPSVRIDEQMIHNAMILFGEIEKIKSFPSRHYSFVEFRSVDEARRAKEGLQGRLFCDPRITITFSSSGLA PGKEDSAFYPGVEGRRLEMFNKHSFAPMDIMFDQPGGPRNFPGPFPPSGIHRPNLPVWPFGPQGVFDPILQGGEHNDLAPSHSDRDPASGILPSPASGIR PPMRSISSGWDVLDPSQFPRDAKRSRIDSAPSVDDDSFPARKMGDRDLGLDKAYGLGPRGAYPSFQGNNSLSPVGGRLKGHFDDDFIWRGIVAKGGMPVC HARCVPVGKGIESEIPPVINCSARTGLDVLAKHYAEAIGFDIVFFLPDSEDDFASYTEFLHYLGSKNRAGVAKFDDGTTLFLVPPSDFLKNVLKVAGPER LYGVVLKLPQQAPNNKSMQQQLPQPIHFSQYTNNQISPPEADYNLLHQQEEQVMSIHHNRVLHEDSKLPSKPIYPLTTVSHAVLPVPQEYASNHSAAPSS AGFLTPDLIATLSTLLPANKQSSSESNQPELGSPIVRPPFSSVIPDKGTSSQGWKHDNQVSGNTSHLQFGNHLNYQLQVQSQFQPSPSVPSTYSHSTNVV PRNSQIQDSTVSLSHQSATPSRPLTSFSMPSQSGQFALSPQVSQQNLFEVPHSTQKGYGVVHGTYVMEPYSPSVIQKPNDTDTLFCQVQGTNFSQTQSGI PPSADRGNGELPSQVQQFQPALSVSGRGISEADKNQRYQSTLQFAANLLLQLQQQQNTSNPDAHGSGNQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43410		FPA	RNA binding (.1.2.3.4)		Potri.007G131100 [exp]	0	1
AT5G47940			unknown protein		Potri.001G265100 [exp]	3.46	0.6699
					Potri.006G181966 [exp]	15.93	0.6962
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Potri.010G182100 [exp]	18.76	0.5873
AT5G19390			Rho GTPase activation protein ...		Potri.009G069700 [exp]	25.98	0.6714
AT5G42470			unknown protein		Potri.005G240000 [exp]	35.87	0.5868
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Potri.007G032700 [exp]	39.79	0.6112
AT2G39750			S-adenosyl-L-methionine-depend...		Potri.010G199300 [exp]	40.09	0.6015
AT5G58160			actin binding (.1)		Potri.006G185501 [exp]	47.13	0.6323
AT1G68730			Zim17-type zinc finger protein...		Potri.010G132400 [exp]	58.52	0.6013
AT4G39140			RING/U-box superfamily protein...		Potri.004G158400 [exp]	61.02	0.5682

Compare expression of checked genes

Potri.007G131100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.