Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43420 501 / 7e-174 3-beta hydroxysteroid dehydrogenase/isomerase family protein (.1) AT2G26260 358 / 3e-118 AT3BETAHSD/D2 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) AT1G47290 319 / 2e-104 AT3BETAHSD/D1 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 (.1.2) AT2G33630 106 / 2e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G53500 45 / 8e-05 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT1G78570 45 / 0.0001 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) AT3G14790 45 / 0.0001 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G218400 [exp] 384 / 3e-128 AT2G26260 816 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) Potri.002G005100 [exp] 104 / 7e-24 AT2G33630 738 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G127500 [exp] 49 / 5e-06 AT4G33360 531 / 0.0 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G272700 [exp] 45 / 0.0001 AT1G78570 1078 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.001G383500 [exp] 44 / 0.0002 AT1G78570 1190 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.011G103700 [exp] 44 / 0.0002 AT1G78570 1211 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.004G230900 [exp] 42 / 0.0008 AT2G02400 493 / 3e-177 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010311 [exp] 363 / 1e-120 AT2G26260 664 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) Lus10013413 [exp] 360 / 1e-118 AT2G26260 724 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) Lus10000358 [exp] 161 / 2e-46 AT1G47290 298 / 3e-101 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 (.1.2) Lus10030720 [exp] 120 / 4e-29 AT2G33630 720 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10013202 [exp] 117 / 4e-28 AT2G33630 714 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004797 [exp] 103 / 5e-26 AT2G43420 110 / 1e-28 3-beta hydroxysteroid dehydrogenase/isomerase family protein (.1) Lus10021740 [exp] 61 / 1e-09 AT4G33360 551 / 0.0 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10004028 [exp] 49 / 6e-06 AT2G45400 290 / 3e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10034224 [exp] 45 / 4e-05 AT3G10915 291 / 1e-100 Reticulon family protein (.1.2.3.4.5.6) Lus10042497 [exp] 45 / 0.0002 AT1G78570 1227 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family CL0484 [poplar] [flax] Peroxisome PF02453 [poplar] [flax] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Potri.007G131200.2 pacid=42765611 polypeptide=Potri.007G131200.2.p locus=Potri.007G131200 ID=Potri.007G131200.2.v4.1 annot-version=v4.1 ATGGCGATCGTTGACGATTTGATAAACCCTAGAGGAGCCCAAAGAACTTGCGTCGTGGTGCTCGGTGGCCGGGGCTTTTTAGGCCGATCGCTTGTTACAC GTCTCCTTCAAGTCGGTGATTGGATCGTTCGAGTCGCCGATTCGACTCCCTCCTTGCAACTCGATGCTGACTCTAATCATGGTGACTCTGTCCTTCGTGA TGCTCTTGCGTCAGGTCTTGCTTCTTATTGTCAAGTCGATGTTCGCGATCCCTCTCAAATCATTAAAGCTGTTGAAGGATCATCTGTTGTATTTTACATG GAAGCTACTGACTTACCGAAACATGATTTCTATGATTGCTACATGATTATAGTTCAAGGTGCTAAAAATGTCGTCAATGCTTGCCGAGAATGCAAAGTTA GACAGCTTATATATAACAGTTCTGCAGATGTAATTTTTGATGGTTCACATGAAATATGTAATAGGGACGAGTCTTTTCCATGCCATTGGAAATTTGCAGA CATGCTGAGTGATCTTAAGGCTCAAGCAGAAGCATTAGTCCTGTGTGCTAACAACATTGGCGGTCTTTTAACATGTGCACTGCGGCCTAGCAATGTCTTC GGACCTGGAGACACTCAGCTTGTTCCTTTTTTAGTGAATTTAGCAAGATCTGGCTGGGCAAAGTTTATTATAGGAAGTGGTGACAATATGTCTGACTTTA CCTATGCTGAGAATGTTACTCATGCCCACATCTGTGCAGCAAAAGCTCTAGATTCTCAGATGATCTCTGTGGCTGGAAAGGCATTTTTCATCACGAACCT CGAACCTATGAAGTTTTGGGAATTTGTATCATTGATATTAGAAGGCTTGGGGTATCAAAGACCTTCCATAAAAGTTCCTGCCAGGATAGTCAGCTATGTT CTCTTGGTTGTTGAATGGATTCGTGAAAAGCTTGGCTCCAGAAAATATAACCATGACATCTCAGCTCGCTTCTTTCATGTAGCCTCATGCACCAGAACTT TTAACTGCTCTGCTGCTCAAAAGTACATTGGATACTCACCAGTTGTCTCCCTGGAAGATGGCATCAGATTGACCATTGAATCATTCTCTCATTTGGCCAA GGACTCGTCTTTTGGAAGATTCTTGAACTTTGAAGATCAATCAAAAGCTGAGAAGCTGCTGGGCAGTGGTAAAGTTTCAGACATTTTGCTGTGGAGAGAT GAGAAGAAAACATTTACTTGTTTTGTTGCTCTTGTCCTGTTGTTTTACTGGTTTTTGCTTTCTGGAAAAACGTTTGCCTCATCCACTGCCAACCTGCTGC TTTTAGTGACAACCATCCTATATGGATATGCCAATCTACCTCCAAAGATAAAATTCAGTGAGAGATTCTATAATGTCCATAGTATGTCTATGGAACAGAG GGCATCACACTATAAGATCATTGGCCCAAGGAGAGGATTGGAACAAATTCTTCCAGGTGGCACTTTTTCTCTATTTCGTTAA
AA sequence Show only first row Show all	>Potri.007G131200.2 pacid=42765611 polypeptide=Potri.007G131200.2.p locus=Potri.007G131200 ID=Potri.007G131200.2.v4.1 annot-version=v4.1 MAIVDDLINPRGAQRTCVVVLGGRGFLGRSLVTRLLQVGDWIVRVADSTPSLQLDADSNHGDSVLRDALASGLASYCQVDVRDPSQIIKAVEGSSVVFYM EATDLPKHDFYDCYMIIVQGAKNVVNACRECKVRQLIYNSSADVIFDGSHEICNRDESFPCHWKFADMLSDLKAQAEALVLCANNIGGLLTCALRPSNVF GPGDTQLVPFLVNLARSGWAKFIIGSGDNMSDFTYAENVTHAHICAAKALDSQMISVAGKAFFITNLEPMKFWEFVSLILEGLGYQRPSIKVPARIVSYV LLVVEWIREKLGSRKYNHDISARFFHVASCTRTFNCSAAQKYIGYSPVVSLEDGIRLTIESFSHLAKDSSFGRFLNFEDQSKAEKLLGSGKVSDILLWRD EKKTFTCFVALVLLFYWFLLSGKTFASSTANLLLLVTTILYGYANLPPKIKFSERFYNVHSMSMEQRASHYKIIGPRRGLEQILPGGTFSLFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43420			3-beta hydroxysteroid dehydrog...		Potri.007G131200 [exp]	0	1
AT3G15220			Protein kinase superfamily pro...		Potri.011G116300 [exp]	1.41	0.9535
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Potri.002G036400 [exp]	1.41	0.9562
AT2G46710			Rho GTPase activating protein ...		Potri.002G176800 [exp]	4.24	0.9356
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Potri.002G011800 [exp]	5.65	0.9323
AT5G62500		ATEB1B	end binding protein 1B (.1)		Potri.015G062900 [exp]	5.91	0.9222	ATEB1.4
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Potri.016G125500 [exp]	6.32	0.9193
AT1G33490			unknown protein		Potri.013G095200 [exp]	6.70	0.9199
AT2G17530			Protein kinase superfamily pro...		Potri.005G102100 [exp]	6.70	0.9260
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.010G154700 [exp]	9.79	0.8985
AT1G56720			Protein kinase superfamily pro...		Potri.013G003700 [exp]	11.22	0.9244

Compare expression of checked genes

Potri.007G131200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.