Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GLX2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06130 502 / 1e-180 GLX2-4 glyoxalase 2-4 (.1.2) AT2G31350 498 / 3e-179 GLX2-5 glyoxalase 2-5 (.1.2) AT2G43430 488 / 4e-175 GLY1, GLX2-1 GLYOXALASE II, glyoxalase 2-1 (.1.2) AT3G10850 189 / 9e-59 GLY2, GLX2-2 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) AT1G53580 60 / 5e-10 GLY3, GLX2-3, ETHE1 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G026500 [exp] 609 / 0 AT1G06130 515 / 0.0 glyoxalase 2-4 (.1.2) Potri.019G062600 [exp] 177 / 6e-54 AT3G10850 415 / 1e-148 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Potri.001G380100 [exp] 60 / 3e-10 AT1G53580 407 / 2e-144 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) Potri.005G204800 [exp] 57 / 4e-09 AT1G53580 395 / 3e-139 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017706 [exp] 530 / 0 AT1G06130 501 / 3e-180 glyoxalase 2-4 (.1.2) Lus10039860 [exp] 512 / 0 AT1G06130 493 / 6e-177 glyoxalase 2-4 (.1.2) Lus10033662 [exp] 474 / 4e-170 AT2G43430 447 / 1e-159 GLYOXALASE II, glyoxalase 2-1 (.1.2) Lus10018625 [exp] 439 / 3e-156 AT2G31350 418 / 5e-148 glyoxalase 2-5 (.1.2) Lus10029086 [exp] 182 / 1e-55 AT3G10850 443 / 1e-159 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10034259 [exp] 182 / 1e-55 AT3G10850 440 / 2e-158 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10029004 [exp] 172 / 6e-52 AT3G10850 397 / 1e-141 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10020760 [exp] 57 / 4e-09 AT1G53580 417 / 3e-148 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) Lus10007336 [exp] 44 / 0.0001 AT1G53580 385 / 4e-135 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0381 [poplar] [flax] Metallo-HOrase PF00753 [poplar] [flax] Lactamase_B Metallo-beta-lactamase superfamily CL0381 [poplar] [flax] Metallo-HOrase PF16123 [poplar] [flax] HAGH_C Hydroxyacylglutathione hydrolase C-terminus
Representative CDS sequence Show only first row Show all	>Potri.007G131300.2 pacid=42766657 polypeptide=Potri.007G131300.2.p locus=Potri.007G131300 ID=Potri.007G131300.2.v4.1 annot-version=v4.1 ATGCAGATGATCTCCAAAGCATCCTGTGCCATGGCTACCCTCCCTTGCTCCAGGGTGAGGAGTGGGCTTTGCATATTGCCAGGCATGAGGCAACTTAGCC TTAGTAAAGGTCTTGTGTATGCATTCACGCGTTTGTTGTCTACGCCATTTAAAACCTTGCGTGGAGCAAGTCGAACACTCAAAGTTGCCCAGTTTTGCAG TGTTTCTAATATGTCATCCTCATTGCAAATTGAATTGGTGCCATGTCTTAAGGACAATTATGCATATCTCTTACATGACGAGGATACAGGCACAGTTGGA GTTGTCGATCCGTCTGAAGCTACACCTGTTATAGATGCTTTAAGTCGGAAAAACTGGAACTTAACTTATATACTAAATACTCATCATCATCATGATCACA CAGGTGGGAATCAAGAGTTGAAAGCAAGATATGGTGCAAAGGTAATTGGTTCGGGAGTCGACAAAGATAGGATTCCTGGCATTGATATAGTTCTGAATGA TGGGGATAAGTGGATGTTTGCAGGCCATGAAGTGCAAGTAATGGACACTCCTGGCCATACCCGAGGCCACATTAGTTTCTACTTTCCTGGTTCTGGGGCT ATTTTTACCGGAGACACTTTATTTAGTTTATCATGTGGCAAGCTTTTTGAAGGAACACCTGAGCAGATGCTTTCTTCCCTCAAGAAAATCGTGTCACTGC CTGATGATACAAATATATATTGTGGTCACGAATATACATTGAGTAACTCAAAGTTTGCACTGTCTATAGAACCAAATAACGAGGCACTCCAGTCCTATGC AGCCCACATAGCACATCTTCGCAGCAAAAGTTTGCCAACAATTCCAACTAAGCTAAAGGTTGAAAAGGCTTGCAATCCTTTCCTCCGTACATCAAGTACA GAAATCCGGCAGACCTTGAACATTCCAGCAACAGCAAGTGATTCAGAAACCTTAGGCGTCATCCGCCAAGCGAAGGACAATTTTTAG
AA sequence Show only first row Show all	>Potri.007G131300.2 pacid=42766657 polypeptide=Potri.007G131300.2.p locus=Potri.007G131300 ID=Potri.007G131300.2.v4.1 annot-version=v4.1 MQMISKASCAMATLPCSRVRSGLCILPGMRQLSLSKGLVYAFTRLLSTPFKTLRGASRTLKVAQFCSVSNMSSSLQIELVPCLKDNYAYLLHDEDTGTVG VVDPSEATPVIDALSRKNWNLTYILNTHHHHDHTGGNQELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVQVMDTPGHTRGHISFYFPGSGA IFTGDTLFSLSCGKLFEGTPEQMLSSLKKIVSLPDDTNIYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAHLRSKSLPTIPTKLKVEKACNPFLRTSST EIRQTLNIPATASDSETLGVIRQAKDNF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06130		GLX2-4	glyoxalase 2-4 (.1.2)		Potri.007G131300 [exp]	0	1	GLX2.2
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Potri.007G138300 [exp]	2.82	0.9238
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Potri.008G073300 [exp]	3.46	0.9196
AT1G77610			EamA-like transporter family p...		Potri.002G084500 [exp]	6.92	0.9061
AT5G40470			RNI-like superfamily protein (...		Potri.017G069800 [exp]	7.41	0.9038
AT1G63110			GPI transamidase subunit PIG-U...		Potri.001G109200 [exp]	9.38	0.9021
AT1G68725		AGP19, ATAGP19	arabinogalactan protein 19 (.1...		Potri.008G111000 [exp]	10.95	0.9027
AT3G11320			Nucleotide-sugar transporter f...		Potri.001G247600 [exp]	14.14	0.8907
AT3G51150			ATP binding microtubule motor ...		Potri.005G116900 [exp]	14.38	0.8966
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.013G014200 [exp]	16.73	0.9022	Pt-FLA14.16
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Potri.004G157600 [exp]	18.89	0.8647	Pt-SEC14.2

Compare expression of checked genes

Potri.007G131300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.