Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08450 619 / 0 AtCRT3, PSL1, EBS2, CRT3 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) AT1G56340 444 / 7e-155 AtCRT1a, CRT1 calreticulin 1a (.1.2) AT1G09210 444 / 2e-154 AtCRT1b calreticulin 1b (.1) AT5G61790 204 / 2e-60 CNX1, ATCNX1 calnexin 1 (.1) AT5G07340 169 / 4e-47 Calreticulin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G026300 [exp] 716 / 0 AT1G08450 615 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Potri.019G055200 [exp] 593 / 0 AT1G08450 569 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Potri.013G009500 [exp] 448 / 1e-156 AT1G09210 579 / 0.0 calreticulin 1b (.1) Potri.005G015100 [exp] 443 / 2e-154 AT1G56340 566 / 0.0 calreticulin 1a (.1.2) Potri.015G109200 [exp] 186 / 2e-53 AT5G61790 710 / 0.0 calnexin 1 (.1) Potri.012G111100 [exp] 176 / 2e-49 AT5G61790 677 / 0.0 calnexin 1 (.1) Potri.001G070600 [exp] 142 / 2e-37 AT5G61790 582 / 0.0 calnexin 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026849 [exp] 595 / 0 AT1G08450 590 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Lus10020222 [exp] 589 / 0 AT1G08450 586 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Lus10010924 [exp] 476 / 9e-166 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10031410 [exp] 456 / 5e-159 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10031409 [exp] 458 / 5e-158 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10010923 [exp] 456 / 6e-158 AT1G56340 616 / 0.0 calreticulin 1a (.1.2) Lus10043021 [exp] 181 / 2e-51 AT5G61790 793 / 0.0 calnexin 1 (.1) Lus10032521 [exp] 179 / 2e-50 AT5G61790 794 / 0.0 calnexin 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00262 [poplar] [flax] Calreticulin Calreticulin family
Representative CDS sequence Show only first row Show all	>Potri.007G131500.1 pacid=42764962 polypeptide=Potri.007G131500.1.p locus=Potri.007G131500 ID=Potri.007G131500.1.v4.1 annot-version=v4.1 ATGGAGAAGAAGCTAAGACTACATGTCGTTCAAGCCTTAAAGCTACTATTTTTGCTTTTCACTATCCACTGTCTCTTCCTCTTCCCTGTCATTCTCTCTG AAATCTTCTTTGAAGAACGTTTTCAAGATGGGTGGAAAGATAGATGGGTTTTATCAGACTGGAAAAGAAGTGAAGGCAAAGCTGGTACTTTTAAGTACAC AGCAGGGAAATGGCCTGGCGATCCAGATGATAAAGGTATTCAAACATATAATGATGCAAAGCATTTTGCTATATCTGCAAAGATATCACCTGAGTTTAGT AACAAGAATAGAACTTTAGTAGTTCAGTATTCTATTAAGTTTGAGCAAGATATTGAGTGTGGTGGTGGGTATATTAAGCTGTTTTCTGGTTATGTTAATC AGAAGAAATTTGGTGGTGATACTCCTTATAGTTTTATGTTTGGACCTGATATATGTGGGACTCAAACAAAGAAGCTTCATGTTATCATGTCTTACCAAGG ACAGAATTATCCAATCAAGAAGGATTTGCAATGTGAAACTGATAAGTTGACTCATTTCTATACATTTATTCTTAGACCTGATGCATCTTACAGTGTGTTG GTTGATAATAGAGAGAGGGAATCAGGAACCATGTATACAGATTGGGATATACTTCCTCCGCCGAAAATCAAAGATACCAAAGCAAAGAGGCCGGCGGACT GGGATGATAGGGAATATATTGAGGATCCTAATGATGTCAAACCAGAGGGATATGATTCTATCCCCCGGGAGATTCCTGATCCTAAGGCTAAAGAGCCTGA TAATTGGGATGAAGAGGAGGATGGAATATGGAGGCCACCCAAGATACCAAATCCAGCTTACAAAGGACCATGGAAAAGAAAGAAAATCAAGAACCCCAAC TATAAAGGAAAATGGAAGACTCCATGGATCGATAACCCAGAGTTTGAAGATGATCCTGACCTTTATGTGCTAAAGCCCATAAAGTATGTGGGTATTGAAG TTTGGCAGGTGAAGGCTGGTTCAATTTTTGACAATATATTGATCTGTGATGACCCACAATATGCGAGAGAAATTGTGAAAGATGTATTCCAGAATAGAGA GATCGAAAAAGATGCCTTTGAGGAAGCAGAGAAAGTGAGAAGAGCTCGAGAAGAAGAGGAAGCTCAGAGAGCTAGAGAGGAAGGTGAAAAGAGGAGGAAA GAAAGGGGCTACAGGAAGCCTCGTAGAAGGCACGATCCTCGGGATTACTTGGATGATTACCATGATGAACTATAA
AA sequence Show only first row Show all	>Potri.007G131500.1 pacid=42764962 polypeptide=Potri.007G131500.1.p locus=Potri.007G131500 ID=Potri.007G131500.1.v4.1 annot-version=v4.1 MEKKLRLHVVQALKLLFLLFTIHCLFLFPVILSEIFFEERFQDGWKDRWVLSDWKRSEGKAGTFKYTAGKWPGDPDDKGIQTYNDAKHFAISAKISPEFS NKNRTLVVQYSIKFEQDIECGGGYIKLFSGYVNQKKFGGDTPYSFMFGPDICGTQTKKLHVIMSYQGQNYPIKKDLQCETDKLTHFYTFILRPDASYSVL VDNRERESGTMYTDWDILPPPKIKDTKAKRPADWDDREYIEDPNDVKPEGYDSIPREIPDPKAKEPDNWDEEEDGIWRPPKIPNPAYKGPWKRKKIKNPN YKGKWKTPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSIFDNILICDDPQYAREIVKDVFQNREIEKDAFEEAEKVRRAREEEEAQRAREEGEKRRK ERGYRKPRRRHDPRDYLDDYHDEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08450		AtCRT3, PSL1, E...	PRIORITY IN SWEET LIFE 1, EMS-...		Potri.007G131500 [exp]	0	1
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Potri.018G097600 [exp]	1.00	0.7369
AT4G33100			unknown protein		Potri.006G224400 [exp]	6.48	0.7109
AT5G37590			Tetratricopeptide repeat (TPR)...		Potri.004G085200 [exp]	7.74	0.6612
AT3G58610			ketol-acid reductoisomerase (....		Potri.004G043700 [exp]	11.57	0.7120	Pt-PGAAIR.3
AT3G04710		TPR10	tetratricopeptide repeat 10, a...		Potri.013G042300 [exp]	15.36	0.7095
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.015G139300 [exp]	16.94	0.6741
AT3G56570			SET domain-containing protein ...		Potri.004G135700 [exp]	22.24	0.6792
AT2G17210			Tetratricopeptide repeat (TPR)...		Potri.004G205900 [exp]	22.84	0.6696
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.013G034200 [exp]	30.00	0.6262
AT1G80810			Tudor/PWWP/MBT superfamily pro...		Potri.003G181300 [exp]	44.18	0.6314

Compare expression of checked genes

Potri.007G131500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.