Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08760 674 / 0 Plant protein of unknown function (DUF936) (.1) AT3G14170 169 / 5e-45 Plant protein of unknown function (DUF936) (.1) AT1G23790 157 / 6e-41 Plant protein of unknown function (DUF936) (.1) AT4G13370 158 / 1e-40 Plant protein of unknown function (DUF936) (.1) AT1G70340 154 / 1e-39 Plant protein of unknown function (DUF936) (.1) AT3G19610 141 / 5e-35 Plant protein of unknown function (DUF936) (.1) AT2G31920 108 / 2e-24 Plant protein of unknown function (DUF936) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G026200 [exp] 1152 / 0 AT1G08760 719 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.003G070200 [exp] 167 / 2e-44 AT3G14170 458 / 2e-157 Plant protein of unknown function (DUF936) (.1) Potri.008G192300 [exp] 162 / 5e-42 AT1G23790 572 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.018G072500 [exp] 156 / 1e-39 AT4G13370 719 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.001G294600 [exp] 155 / 2e-39 AT3G19610 177 / 2e-47 Plant protein of unknown function (DUF936) (.1) Potri.009G024800 [exp] 145 / 2e-36 AT2G31920 293 / 1e-91 Plant protein of unknown function (DUF936) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036076 [exp] 847 / 0 AT1G08760 731 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10026806 [exp] 845 / 0 AT1G08760 732 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10013007 [exp] 162 / 2e-45 AT1G23790 253 / 6e-82 Plant protein of unknown function (DUF936) (.1) Lus10008138 [exp] 166 / 1e-44 AT3G14170 350 / 8e-117 Plant protein of unknown function (DUF936) (.1) Lus10029158 [exp] 166 / 7e-44 AT1G70340 477 / 2e-164 Plant protein of unknown function (DUF936) (.1) Lus10013177 [exp] 166 / 1e-43 AT3G14170 459 / 9e-158 Plant protein of unknown function (DUF936) (.1) Lus10043255 [exp] 159 / 1e-40 AT4G13370 652 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10019398 [exp] 155 / 3e-39 AT4G13370 646 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10002129 [exp] 153 / 1e-38 AT3G19610 260 / 9e-77 Plant protein of unknown function (DUF936) (.1) Lus10012367 [exp] 151 / 3e-38 AT3G19610 174 / 2e-46 Plant protein of unknown function (DUF936) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06075 [poplar] [flax] DUF936 Plant protein of unknown function (DUF936)
Representative CDS sequence Show only first row Show all	>Potri.007G131600.4 pacid=42765524 polypeptide=Potri.007G131600.4.p locus=Potri.007G131600 ID=Potri.007G131600.4.v4.1 annot-version=v4.1 ATGGCAAATCTTGTACCTGGAGTGTTACTCAAGCTTTTGCAGCACATGGATACAGATGTCAAGGTTGCTGGGGAACATAGGTCATCTTTATTGCAAGTTG TGAGCATTGTACCAGCATTAGCAGGTGGTGAGTTATTCTCTAATCAAGGGTTTTATCTTAAGGTATCAGATTCATCTCATGCCACTTATGTGTCTTTACC TGACGAGCATGATGATTTAATTCTTAGTGATAAAATCCAATTAGGCCAATTTATTCATGTTGAAAGGCTTCAACCAGCCTCACCAGTGCCTATTCTTAGA GGGGTCAGGCCAGTACCTGGGAGGCACCCTTGTGTAGGGAGCCCTGAAGATATTGTAGCATCCCAGTCCCCTGGTTTTCTCAATAATAATCTGGAGAAAG TGAAATCACCTAAAAGGGGTGTTTTGGGTGGTTGTAATGTTGGAGAGAAGGATAAATCAGTGGGGGGTAGTGCGAATGGTAATTCTCATAAGGAGGCTTT GTCAGATAAGAAAGCGACTCAAACCAGATCAAAGTCTCAATTGTCAAAACTTACACTAGATTTGGATTTGAAAAGGGAACGTGTGGCAAAATCTAAGTCA TCGAGTTCAAGATCAATTCCTTCTTCTCCAACTAGTTGTTATTCATTGCCTAGTTCATTTGAGAAGTTTTCAAATGGGGTTCGGCAGCAGTCAGTGATTA AGGGATCGGACAAGGAATCACCTAGGATTGTAGAAAAGGCAAGTTCTGTTCGTGGGGCAAGTCCCACTGTGAAGAGGGTGCCGGTGATCAAGAATATTGT TCAGGGGATTGAGTTGGGGGCCAAAGCTTTGAGGAAAAGTTGGGAGGGGAATATGGAGGTGAAGCATAGAGAGAAATCAAATTTGAGAGGCGCCAGACAC GATCCAAAGCCTGAAGCTTGGAGTGTTTCTACTCCAAGAAAAAGTACATCAAGTGAGAGATTGCCATCTAAAGAGGATTACAGGACCCAAGTATCTTCTA AGTCATCCAAAGAGGAGACTAAAATTCAGACATCTACCAAGAAAAATGTTGCAAATGGAAGTTTGGATGAACAAGACAAGTCAAATAAGCTAAGAACAAC TGCTGGAAAGAAATCATCAGAGCATGCTAACAATGGATTCCCAGGAAATCTGGTCAAGGTTTCAATAAGTAGCAGAAGATTGACTGAAGGAAGTGTTTCA TGGAGTTCACTGCCCTCTTCTCTTGCCAAATTTGGAAAGGAAGTTATGAAGCATCGAGATGCTGCGCAGACGGCAGCAATAGAGGCTATTCAAGAGGCAA CTGCTGCGGAGAGCTTACTTCGATGTCTAAGTATGTATTCAGAGCTGACTTCCTCTGCTCGGGAAGACAACCCACAACCTGCTGTGGAGCAGTTTTTAGC TCTTCATGCAAGCTTGAATAATTCTCGCTTGATTGCCGATTCTCTTTTTAAAATTATTCCAGCTGGTTCTTCCCCAGATTCTAATGACAATCCATCTGAA GAAGCGCTAAAGGTCACATCTGATAGACGTAAACATGCAGCCTCTTGGGTTCAAGCTGCACTGGCCACCAATCTGTCATCCTTTTCATTATTTACCAAAG ATACTACTTCAGCTCCTAGTCAAGGTCAAAAGCCTATTGCCAGCAATCAATCCATTTTAGTCCTTGAAAACTCTTCTAAGAATACCACAACGAAAACTCA TGGGAAAACGCGTCCAACAGTTGGCTCCAAGCTTGTAGCTACAGGAGCTTTCCGCAAACCAGGGGATAACTCTACCGTTAGTCAAAAGGCACCACCCCAA CCTCCAGCAGAGTGGATCAGAGGAAATGGCCTTGATGAGGCCGTGGACTTGGCTGGAATGTTGCGGATGGAATCCCAAGATTGGTTTTTGGGATATGTTG AGAGGTTCTTGGATGCTGATGTAGATACCTCAGCTTTGTCAGATAATGGTCAAATAGCAGGGATGTTGACGCAGCTCAAAAGCGTGAATGACTGGTTAGA TGAGATTGGGTCGAGCAAGGATGAAGCAGAAACACCCCATGTTTCATCAGAGACCGTTGACAGGTTACGGAAGAAGATTTACGAGTACCTTCTTACTCAT GTGGAATCTGCTGCCGCTGCACTAGGTGGTGGATCACAGCCATCACCGGCAAACCGAAGTATAGAAACTAAATCAAAGAGGTGA
AA sequence Show only first row Show all	>Potri.007G131600.4 pacid=42765524 polypeptide=Potri.007G131600.4.p locus=Potri.007G131600 ID=Potri.007G131600.4.v4.1 annot-version=v4.1 MANLVPGVLLKLLQHMDTDVKVAGEHRSSLLQVVSIVPALAGGELFSNQGFYLKVSDSSHATYVSLPDEHDDLILSDKIQLGQFIHVERLQPASPVPILR GVRPVPGRHPCVGSPEDIVASQSPGFLNNNLEKVKSPKRGVLGGCNVGEKDKSVGGSANGNSHKEALSDKKATQTRSKSQLSKLTLDLDLKRERVAKSKS SSSRSIPSSPTSCYSLPSSFEKFSNGVRQQSVIKGSDKESPRIVEKASSVRGASPTVKRVPVIKNIVQGIELGAKALRKSWEGNMEVKHREKSNLRGARH DPKPEAWSVSTPRKSTSSERLPSKEDYRTQVSSKSSKEETKIQTSTKKNVANGSLDEQDKSNKLRTTAGKKSSEHANNGFPGNLVKVSISSRRLTEGSVS WSSLPSSLAKFGKEVMKHRDAAQTAAIEAIQEATAAESLLRCLSMYSELTSSAREDNPQPAVEQFLALHASLNNSRLIADSLFKIIPAGSSPDSNDNPSE EALKVTSDRRKHAASWVQAALATNLSSFSLFTKDTTSAPSQGQKPIASNQSILVLENSSKNTTTKTHGKTRPTVGSKLVATGAFRKPGDNSTVSQKAPPQ PPAEWIRGNGLDEAVDLAGMLRMESQDWFLGYVERFLDADVDTSALSDNGQIAGMLTQLKSVNDWLDEIGSSKDEAETPHVSSETVDRLRKKIYEYLLTH VESAAAALGGGSQPSPANRSIETKSKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08760			Plant protein of unknown funct...		Potri.007G131600 [exp]	0	1
AT1G34260		FAB1D	FORMS APLOID AND BINUCLEATE CE...		Potri.019G087000 [exp]	3.00	0.7867
AT1G09890			Rhamnogalacturonate lyase fami...		Potri.002G110100 [exp]	4.00	0.8026
AT4G34280			transducin family protein / WD...		Potri.009G092500 [exp]	5.09	0.7439
AT2G17200		DSK2	ubiquitin family protein (.1)		Potri.005G100200 [exp]	5.29	0.7082
AT4G00080		UNE11	unfertilized embryo sac 11, Pl...		Potri.002G145800 [exp]	7.93	0.7294
AT1G30760			FAD-binding Berberine family p...		Potri.011G161400 [exp]	8.77	0.8066
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Potri.008G128800 [exp]	8.94	0.7786
AT3G53810			Concanavalin A-like lectin pro...		Potri.009G035400 [exp]	11.61	0.7748
AT3G07650	CO	COL9	CONSTANS-like 9 (.1.2.3.4)		Potri.002G214500 [exp]	11.74	0.7267
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Potri.014G074700 [exp]	13.74	0.7622

Compare expression of checked genes

Potri.007G131600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.