Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28580 220 / 2e-65 Plant protein of unknown function (DUF247) (.1) AT2G44930 213 / 6e-63 Plant protein of unknown function (DUF247) (.1) AT4G31980 213 / 7e-62 unknown protein AT3G50160 201 / 2e-58 Plant protein of unknown function (DUF247) (.1) AT1G67150 187 / 3e-54 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT3G50140 187 / 5e-53 Plant protein of unknown function (DUF247) (.1) AT3G50150 182 / 1e-51 Plant protein of unknown function (DUF247) (.1) AT3G50120 179 / 2e-50 Plant protein of unknown function (DUF247) (.1) AT3G50170 178 / 1e-49 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50130 174 / 3e-48 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G019700 [exp] 403 / 3e-137 AT2G44930 220 / 6e-66 Plant protein of unknown function (DUF247) (.1) Potri.017G019400 [exp] 402 / 5e-137 AT2G44930 240 / 1e-73 Plant protein of unknown function (DUF247) (.1) Potri.017G024300 [exp] 397 / 7e-135 AT2G44930 214 / 9e-64 Plant protein of unknown function (DUF247) (.1) Potri.017G024866 [exp] 394 / 3e-133 AT2G44930 211 / 6e-62 Plant protein of unknown function (DUF247) (.1) Potri.017G019300 [exp] 367 / 2e-123 AT2G44930 219 / 8e-66 Plant protein of unknown function (DUF247) (.1) Potri.014G054200 [exp] 324 / 2e-106 AT2G28580 239 / 7e-73 Plant protein of unknown function (DUF247) (.1) Potri.014G053900 [exp] 256 / 2e-80 AT2G44930 214 / 1e-63 Plant protein of unknown function (DUF247) (.1) Potri.012G035100 [exp] 249 / 1e-77 AT2G44930 164 / 3e-45 Plant protein of unknown function (DUF247) (.1) Potri.012G035001 [exp] 246 / 3e-76 AT2G44930 164 / 4e-45 Plant protein of unknown function (DUF247) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039780 [exp] 186 / 2e-53 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 172 / 7e-48 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 171 / 7e-48 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 170 / 2e-47 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 169 / 7e-47 AT4G31980 251 / 5e-76 unknown protein Lus10004516 [exp] 166 / 5e-46 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10027719 [exp] 162 / 2e-44 AT2G36430 424 / 5e-146 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 157 / 9e-43 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10035569 [exp] 155 / 4e-42 AT2G36430 427 / 2e-147 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 155 / 6e-42 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.007G132300.1 pacid=42765425 polypeptide=Potri.007G132300.1.p locus=Potri.007G132300 ID=Potri.007G132300.1.v4.1 annot-version=v4.1 ATGATGTTGAAAAGGCAAGTGCATCGAATATTGAAGAGGACACTAACAAGGCAAGCGCTTCAGACATTGATGAGGATACTAACAAGGCAAGTATCCAAGG CAAGCGCTTCAGACATTGATGAGGATACTAACAAGGCAAGCGCTTCAAATATGAAAATGGCTTGGGACTTGGACGAAGGATATTATGAGATTGACAACAA AGAATGGGAACTTCGAAATATTTGGCTAGATCTGGAAGGATTAAAGGAGTTGCCCCCTCAAAACGACCGGGCTGATGAATGCTGTATCTACAGGGTTCCC AACTCACTTCGAGACAGAAATCCGGAAGCCTACACTCCACAGCTGATTTCAATAGGTCCTTTTCACCACAATGATGAAAGACTAGAGACCATGGAAACGC TGAAAAGAAGATATCAAGGAGAGTTCCTTAAAAGGAATGACATGGATGAGAAGAACTTTATGGATTTTCTAAGAAGAATTCAGAAAAAAGAAGAGAGTAT CCGACTCTGTTATTCAGGGAGCTTCAGAATCCACACAGAACGTTTTGTAAAGATGATCGTGCTGGATGCTGTCTTCATCATTGAGTTTTTGAAGGATTCA TATGATGATGACTTTCCTCAAAATCTTGATACCAGGATGATATCTTGCATAGGAGAAGACTTGATGCTACTTGAAAACCAACTACCTTTCTCCGTTATCG ACTGTATATATAGCGAGTTTTATAACCCTCGCCAAGATGACATTTCTTTTCTTGATCTTGCCACCCATCATTTTGGAAAGTACCAACTTGCACAAAGGCC AGAATCCACACCACCGACAGAAGTATGGCATTTCACTGATTTGCTAATGAATTTTATGTTGAAAGGAGCCCTCGAGCGAGAAAATCGCTCTAAGCCTATC AAGCTGAAATATAGCGCCGTCACGCTTCGCAAAGCAGGAGTGAAGTTTCAGGCCACCGAAGACAAGTGTTTGTTCAACGTGCATTTTGAGAACGGAGTGT TGAAAATACCACTCTTGGAAGTTGATGATTCCATGGAACGTTTTGTACGAAATGTCATGGCCTGGGAGCAGTGCTACAAACCGGGTGAAGCTTACATCAG CAACTACTTTAAGTTTATGGACTATCTTATTGACAGGTCAGAAGACGTGGCTTTGCTAGCTGAAGAGGAAATTATTAAGAACTGGCTAGGTGACGACTCC GCAGTTTCAAAGTTGATGAACAATCTAAGCCAACGTTGTGAAAAAACTTCTTATTATAGTGATATCTGTCAAGCGCTGAATGCCTGCTATGAGAACCCCT GGAACCGTAGAAAGGCAACCTTGAAACTCGTATATTTCAGCAATCTTTGGAGAGGTACGGGAACTGTTGCTGCAGCTTTCCTTCTAATCCTCACTTTGAT ACAGACTATAACTTCCCTGAAATCGTCATTCTAG
AA sequence Show only first row Show all	>Potri.007G132300.1 pacid=42765425 polypeptide=Potri.007G132300.1.p locus=Potri.007G132300 ID=Potri.007G132300.1.v4.1 annot-version=v4.1 MMLKRQVHRILKRTLTRQALQTLMRILTRQVSKASASDIDEDTNKASASNMKMAWDLDEGYYEIDNKEWELRNIWLDLEGLKELPPQNDRADECCIYRVP NSLRDRNPEAYTPQLISIGPFHHNDERLETMETLKRRYQGEFLKRNDMDEKNFMDFLRRIQKKEESIRLCYSGSFRIHTERFVKMIVLDAVFIIEFLKDS YDDDFPQNLDTRMISCIGEDLMLLENQLPFSVIDCIYSEFYNPRQDDISFLDLATHHFGKYQLAQRPESTPPTEVWHFTDLLMNFMLKGALERENRSKPI KLKYSAVTLRKAGVKFQATEDKCLFNVHFENGVLKIPLLEVDDSMERFVRNVMAWEQCYKPGEAYISNYFKFMDYLIDRSEDVALLAEEEIIKNWLGDDS AVSKLMNNLSQRCEKTSYYSDICQALNACYENPWNRRKATLKLVYFSNLWRGTGTVAAAFLLILTLIQTITSLKSSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28580			Plant protein of unknown funct...		Potri.007G132300 [exp]	0	1
AT5G65960			GTP binding (.1)		Potri.002G177100 [exp]	2.82	0.9273
AT2G37030			SAUR-like auxin-responsive pro...		Potri.016G091500 [exp]	3.00	0.9292
AT1G64870			unknown protein		Potri.006G252800 [exp]	4.89	0.9159
AT5G39220			alpha/beta-Hydrolases superfam...		Potri.017G093500 [exp]	5.00	0.9001
AT1G28510			Optic atrophy 3 protein (OPA3)...		Potri.013G123000 [exp]	5.47	0.9236
AT3G15220			Protein kinase superfamily pro...		Potri.001G397600 [exp]	6.32	0.9024
AT5G46850			unknown protein		Potri.003G095200 [exp]	7.07	0.9138
AT1G57790			F-box family protein (.1)		Potri.012G106800 [exp]	7.74	0.9235
AT5G61540			N-terminal nucleophile aminohy...		Potri.014G191900 [exp]	8.12	0.9126
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.017G018801 [exp]	8.36	0.9189

Compare expression of checked genes

Potri.007G132300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.