Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43480 446 / 3e-158 Peroxidase superfamily protein (.1) AT5G24070 439 / 3e-155 Peroxidase superfamily protein (.1) AT5G17820 225 / 1e-71 Peroxidase superfamily protein (.1) AT5G22410 219 / 4e-69 RHS18 root hair specific 18 (.1) AT3G03670 211 / 4e-66 Peroxidase superfamily protein (.1) AT1G34510 199 / 1e-61 Peroxidase superfamily protein (.1) AT5G51890 197 / 7e-61 Peroxidase superfamily protein (.1) AT3G32980 197 / 3e-60 Peroxidase superfamily protein (.1) AT5G19890 195 / 7e-60 Peroxidase superfamily protein (.1) AT4G11290 195 / 9e-60 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G110200 [exp] 241 / 9e-78 AT5G22410 340 / 1e-116 root hair specific 18 (.1) Potri.006G069600 [exp] 216 / 3e-68 AT2G41480 498 / 6e-179 Peroxidase superfamily protein (.1) Potri.013G066800 [exp] 211 / 1e-65 AT4G26010 360 / 1e-124 Peroxidase superfamily protein (.1) Potri.018G131600 [exp] 209 / 3e-65 AT2G41480 478 / 4e-171 Peroxidase superfamily protein (.1) Potri.015G003600 [exp] 203 / 7e-63 AT1G05260 285 / 6e-95 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.001G218500 [exp] 201 / 8e-62 AT5G22410 280 / 1e-92 root hair specific 18 (.1) Potri.001G218450 [exp] 201 / 8e-62 AT5G22410 280 / 1e-92 root hair specific 18 (.1) Potri.016G125000 [exp] 197 / 2e-60 AT2G41480 419 / 7e-148 Peroxidase superfamily protein (.1) Potri.012G006800 [exp] 197 / 2e-60 AT1G05260 291 / 2e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004804 [exp] 460 / 2e-163 AT5G24070 412 / 1e-144 Peroxidase superfamily protein (.1) Lus10025586 [exp] 442 / 3e-156 AT5G24070 418 / 6e-147 Peroxidase superfamily protein (.1) Lus10022962 [exp] 312 / 9e-107 AT5G24070 293 / 1e-99 Peroxidase superfamily protein (.1) Lus10018375 [exp] 258 / 3e-84 AT5G17820 293 / 1e-98 Peroxidase superfamily protein (.1) Lus10004859 [exp] 227 / 2e-72 AT5G22410 309 / 1e-104 root hair specific 18 (.1) Lus10043010 [exp] 227 / 4e-72 AT5G22410 300 / 9e-101 root hair specific 18 (.1) Lus10032511 [exp] 222 / 3e-70 AT5G22410 302 / 8e-102 root hair specific 18 (.1) Lus10013631 [exp] 219 / 5e-69 AT5G17820 331 / 2e-113 Peroxidase superfamily protein (.1) Lus10001324 [exp] 216 / 6e-68 AT5G17820 327 / 6e-112 Peroxidase superfamily protein (.1) Lus10015555 [exp] 214 / 3e-67 AT2G41480 432 / 9e-153 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.007G132800.1 pacid=42765232 polypeptide=Potri.007G132800.1.p locus=Potri.007G132800 ID=Potri.007G132800.1.v4.1 annot-version=v4.1 ATGAGGAGAGGTCAGAAGTGCGTGTTTTTCCCGCTACTGGCTATTGCATTATGCTTGTGTATAGCAAATGTGGATGCCGGGATAACACTGCAACCACCGG TAAAGTTGAAATGGCATTACTACCGGCAGCATACTACATGCACCTATGCAGAGGAGTTTGTTAGGCACCAGGTAGAGTTATTTTGGAAGGCAGATAGAAG CATTACTGCCAAGCTTCTTCGGTTGCTCTACTCGGATTGCTTTGTGACTGGCTGTGATGCATCGATTCTTCTTGACGGACCAGACTCAGAGAAGACAGCT CCACAAAACTGGGGTCTCGGAGGATTTGTGGCCATTGACAAAATAAAAGAAGTTCTTGAGATACGGTGTCCTGGTGTTGTCTCTTGTGCTGATATTCTCA ACCTGGCTACCAGGGATGCTGTTCATTTGGCAGGCGGACCAGCTTATCCCGTGTTCACAGGAAGAAGGGATGGAGTGTCATCAAAAGCATCAACGGTGGA TCTCCCATCACCATCCATCTCAGGGGGAGAAGCATTGGCATATTTCAAGTCTAGAGGCCTGGATGTGTTGGACCTGGGAACACTATTAGGGGCACACTCA ATGGGGAGAACACATTGTCGCTACATTTTGGACCGACTGTACAATTTCAACAATACCGGAAGGCCAGACCCAAGCATGAACAAAGCATTTGCAGATCAAA TGAGAAAGCAATGTCCCCAAAGAACCAAAAAGGGCCAATCTGACCCACTGGTGTTTCTAAACCCAGAATCTAGCTCTAAATACACCTTTACAGAATCCTT CTACAAGAGGGTTCTCTCCTACCAGTCTGTCCTAGGAGTTGATCAGCAACTACTTTTCAGCAATGACACACTACAGATAACACAAGAATTTGCTGGTGGT TTTGAGTACTTAAGAAGGTCACTTGCTCTATCAATGAGTAGGATGGGAAACATCAATGTGCTAACGGGAAATGCAGGAGAGATACGCCGAAATTGCCGAT ACATAAATGATGGCAAACCCCAATAA
AA sequence Show only first row Show all	>Potri.007G132800.1 pacid=42765232 polypeptide=Potri.007G132800.1.p locus=Potri.007G132800 ID=Potri.007G132800.1.v4.1 annot-version=v4.1 MRRGQKCVFFPLLAIALCLCIANVDAGITLQPPVKLKWHYYRQHTTCTYAEEFVRHQVELFWKADRSITAKLLRLLYSDCFVTGCDASILLDGPDSEKTA PQNWGLGGFVAIDKIKEVLEIRCPGVVSCADILNLATRDAVHLAGGPAYPVFTGRRDGVSSKASTVDLPSPSISGGEALAYFKSRGLDVLDLGTLLGAHS MGRTHCRYILDRLYNFNNTGRPDPSMNKAFADQMRKQCPQRTKKGQSDPLVFLNPESSSKYTFTESFYKRVLSYQSVLGVDQQLLFSNDTLQITQEFAGG FEYLRRSLALSMSRMGNINVLTGNAGEIRRNCRYINDGKPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43480			Peroxidase superfamily protein...		Potri.007G132800 [exp]	0	1
AT5G20260			Exostosin family protein (.1)		Potri.006G064600 [exp]	1.41	0.9694
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.008G136300 [exp]	3.00	0.9679
AT5G60520			Late embryogenesis abundant (L...		Potri.009G012600 [exp]	3.46	0.9681
AT3G55470			Calcium-dependent lipid-bindin...		Potri.010G203100 [exp]	4.89	0.9569
AT4G37160		SKS15	SKU5 similar 15 (.1)		Potri.007G038200 [exp]	4.89	0.9639
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.016G021500 [exp]	5.00	0.9647
AT1G15125			S-adenosyl-L-methionine-depend...		Potri.012G049900 [exp]	5.29	0.9609
AT1G50720			Stigma-specific Stig1 family p...		Potri.001G356600 [exp]	8.36	0.9443
AT5G23850			Arabidopsis thaliana protein o...		Potri.002G157900 [exp]	9.21	0.9370
AT5G06905		CYP712A2	"cytochrome P450, family 712, ...		Potri.016G050200 [exp]	10.48	0.9514	CYP712.2

Compare expression of checked genes

Potri.007G132800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.