Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43490 807 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) AT3G59570 755 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G27100 209 / 2e-60 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G54780 199 / 1e-56 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G20440 185 / 1e-51 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT4G28550 180 / 8e-50 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G41940 127 / 1e-30 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G53570 125 / 5e-30 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G24390 124 / 7e-30 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT3G49350 123 / 2e-29 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G023200 [exp] 1249 / 0 AT2G43490 795 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.011G135300 [exp] 216 / 1e-62 AT4G27100 667 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.001G419100 [exp] 201 / 2e-57 AT5G54780 663 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.005G227400 [exp] 196 / 1e-55 AT4G28550 616 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.012G024500 [exp] 128 / 5e-31 AT3G49350 601 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.015G007400 [exp] 127 / 1e-30 AT5G41940 596 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.003G146300 [exp] 124 / 2e-29 AT5G41940 624 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.001G084300 [exp] 123 / 2e-29 AT5G41940 603 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.018G127500 [exp] 120 / 5e-28 AT5G52580 917 / 0.0 RabGAP/TBC domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004802 [exp] 607 / 0 AT2G43490 499 / 2e-170 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Lus10043064 [exp] 211 / 2e-60 AT2G20440 630 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10011159 [exp] 201 / 5e-57 AT4G27100 634 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10022905 [exp] 194 / 2e-54 AT4G28550 621 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10024920 [exp] 192 / 4e-54 AT4G28550 618 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008872 [exp] 129 / 3e-31 AT5G41940 582 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10023237 [exp] 127 / 1e-30 AT5G41940 571 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10033232 [exp] 127 / 2e-30 AT5G41940 590 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10022356 [exp] 125 / 8e-30 AT3G49350 650 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10027697 [exp] 112 / 8e-27 AT5G52580 526 / 0.0 RabGAP/TBC domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [poplar] [flax] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Potri.007G132900.2 pacid=42765801 polypeptide=Potri.007G132900.2.p locus=Potri.007G132900 ID=Potri.007G132900.2.v4.1 annot-version=v4.1 ATGTCCGGTGGTGAGAGAGAGGAGAAGCAATGGAAATGTGGAAAAGCGATTGCGGTGGCGAATTTACAGAGAGTAGGAACAATGGTGAGGGATATAGGAG AGCCTTGTCTTTCACAATCACCTATAAAGGTTGTTATACTTGTAGGAAGAATGCTTAAGCCGGAGAAGTGGCAATCGACTTTTGATAGTAATGGAAAGGT TTCATGTTTTCGGAAAGCGCTGAAGTTGATTGTTTTAGGGGGTGTGGATCCATCTATTAGGCCACAAGTTTGGGAGTTTCTACTTGGCTGTTATACACTG GGAACCACTGCTGAGTACCGGAGGCAGCTGAGGACAGCACGAAGGGAACGCTACAGAGACCTCATCGAGCAATGCCAAAAAATGCATTCAAGTATAGGAA CCGGTGCCCTTGCGTTTGCTGTGGGGTCCAAAGTTATGGATATGAGGACACCATCCAAGGATGATGGGAGAGGGGAAGAAGCTACTGTCAAAAGTAGACA AACCTCTGTAGATGTTACTAACAGCTTAGAGAATTATAGCGATTGGAATAATAATTGTACAGATACAGCGTGCACGTGTGCAGGGCAAAGTTCTAGTGAT TCTGCTGGACTTGTCAGTGTGAGGGGAAGCTCAGATAGTGCAGCACATGATTCTTCTTGTTTCATACCTACTTCTGGCCCACTCAATAGTGATTCTCCAA AAAGAGGTGGAGAGGCTCATGGATCAGAGTATGTAGTGGAGAGTTATTTTGATTTTCCTCCTTTACCTGTCACGAATTTGTTTGACAAGAGAGAAGATAA GAAAGAAAGTGGTGTGCTTGATGACAAACCACGTACACAAAGAAAATTGAGATTTCAAGATGACAGGATGCACAGTTTTCAAATTAATAATAATGTAGAT TTAATTATTGAATCCAGTGGGGAACCATCTAACCATGCTTCACCTCAGAAGAAATCTGAAATTGAATTAGTTCACCAAGAGGACCATGAACCAGTATTAC AGTCCAATAATCTTGGTGATGAGAAAGAAATAGTGGACAAATTGAGAATAGCTGATGTTCCTGAGACACCACTGTTAAATGGAACAACATCTAATGGAGG GGTGGCTGGTGAGAACAGAGTGTCTGAATGGCTCTGGACATTGCATCGAATAGTTGTTGATGTTGTAAGAACAGATAGTCATCTTGAATTCTATGAGGAT AAAAGAAATTTAGCTAGGATGTCTGACATCCTTGCTGTCTATGCATGGGTTGATCCAGCCACTGGTTATTGTCAAGGTATGAGCGATCTGCTGTCTCCTT TTGTTGTTCTCTTTGAGGACAATGCTGATGCATTTTGGTGCTTTGAGATGCTTCTACGGAGAATGCGTGAAAATTTTCAGATGGAAGGACCAACTGGGGT CATGAAACAGTTGCAAGCATTGTGGCACATCTTGGAACTCACAGACAAAGAAATGTTTGCACACCTATCACGTATTGGTGCTGAAAGCCTCCATTTTGCA TTCCGGATGCTGATGGTTCTCTTCCGCCGAGAGTTATCTTTTAGTGAGGCTCTGCGGATGTGGGAGATGATGTGGGCTGCTGATTTTGATGAATCTGTTG TGTGTGATCTAGAGGAGAATTGTCTGGATGCACTGTTGCTAAATGTTCCAAGGGATTGTGAAGGAGATACAAGGGAAGAAAGCATTGAAAATAGTGATGG TAGTTCAAGGGATGGTTCACAATCAAAGCATGGAAATGTTGAGCACCTAACGTCTGACAACACTGGAATGAAATCCGCATCAGCTTATAACTTTTGTGGT TTCACAAAGAATTTTTGGTCAAGAAATGACCGCATGCAGATTACCAATGCAATCTCATCAACTAAGAACGGGGATGACGAATTACCTGTTTTCTGTGTCG CTGCTATTCTCATCATGAACCGGCAAAAGATAATCAAAGAAACTCGCTCGATTGATGATATGATAAAGATTTTCAATGATAGGCTGCTGAAGATTCATGT TAAAAGATGCATACGCACAGCGACCAAACTTCGGAAGAAATATTTTTACAAGCTGATCAAAAGCAAGAACCCTGTAGTCCAGAATGGTGAATAA
AA sequence Show only first row Show all	>Potri.007G132900.2 pacid=42765801 polypeptide=Potri.007G132900.2.p locus=Potri.007G132900 ID=Potri.007G132900.2.v4.1 annot-version=v4.1 MSGGEREEKQWKCGKAIAVANLQRVGTMVRDIGEPCLSQSPIKVVILVGRMLKPEKWQSTFDSNGKVSCFRKALKLIVLGGVDPSIRPQVWEFLLGCYTL GTTAEYRRQLRTARRERYRDLIEQCQKMHSSIGTGALAFAVGSKVMDMRTPSKDDGRGEEATVKSRQTSVDVTNSLENYSDWNNNCTDTACTCAGQSSSD SAGLVSVRGSSDSAAHDSSCFIPTSGPLNSDSPKRGGEAHGSEYVVESYFDFPPLPVTNLFDKREDKKESGVLDDKPRTQRKLRFQDDRMHSFQINNNVD LIIESSGEPSNHASPQKKSEIELVHQEDHEPVLQSNNLGDEKEIVDKLRIADVPETPLLNGTTSNGGVAGENRVSEWLWTLHRIVVDVVRTDSHLEFYED KRNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFEDNADAFWCFEMLLRRMRENFQMEGPTGVMKQLQALWHILELTDKEMFAHLSRIGAESLHFA FRMLMVLFRRELSFSEALRMWEMMWAADFDESVVCDLEENCLDALLLNVPRDCEGDTREESIENSDGSSRDGSQSKHGNVEHLTSDNTGMKSASAYNFCG FTKNFWSRNDRMQITNAISSTKNGDDELPVFCVAAILIMNRQKIIKETRSIDDMIKIFNDRLLKIHVKRCIRTATKLRKKYFYKLIKSKNPVVQNGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43490			Ypt/Rab-GAP domain of gyp1p su...		Potri.007G132900 [exp]	0	1
AT2G32900		ATZW10	centromere/kinetochore protein...		Potri.002G223600 [exp]	1.00	0.7904	Pt-ZW10.1
AT5G50350			unknown protein		Potri.008G012000 [exp]	1.41	0.7688
AT2G03060	MADS	AGL30	AGAMOUS-like 30 (.1.2)		Potri.010G167300 [exp]	11.61	0.7148
AT3G52770		ZPR3	LITTLE ZIPPER 3, protein bindi...		Potri.006G083201 [exp]	12.40	0.7375
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Potri.005G140200 [exp]	15.49	0.7298	SDG916,Pt-CLF.2
AT1G73350			unknown protein		Potri.004G066700 [exp]	15.58	0.7298
AT5G40440		ATMKK3	mitogen-activated protein kina...		Potri.001G345500 [exp]	16.06	0.6823
AT3G58650			unknown protein		Potri.010G140900 [exp]	18.00	0.7424
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Potri.007G025700 [exp]	18.16	0.7398
AT1G71696		SOL1.4, SOL1.3,...	SUPPRESSOR OF LLP1 1, carboxyp...		Potri.005G197000 [exp]	22.44	0.6501	SOL1.1

Compare expression of checked genes

Potri.007G132900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.