Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43500 700 / 0 NLP8 Plant regulator RWP-RK family protein (.1.2) AT3G59580 654 / 0 NLP9 Plant regulator RWP-RK family protein (.1.2) AT1G64530 395 / 6e-123 NLP6 Plant regulator RWP-RK family protein (.1) AT1G76350 382 / 2e-118 NLP5 Plant regulator RWP-RK family protein (.1) AT1G20640 381 / 7e-118 NLP4 Plant regulator RWP-RK family protein (.1.2) AT4G24020 380 / 3e-116 NLP7 NIN like protein 7 (.1) AT2G17150 361 / 2e-109 NLP1 Plant regulator RWP-RK family protein (.1.2) AT4G38340 304 / 7e-90 NLP3 Plant regulator RWP-RK family protein (.1) AT4G35270 251 / 1e-69 NLP2 Plant regulator RWP-RK family protein (.1) AT5G66990 58 / 7e-09 RKD3 RWP-RK domain-containing 3, RWP-RK domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G018500 [exp] 1578 / 0 AT2G43500 811 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.003G143000 [exp] 421 / 2e-131 AT4G24020 994 / 0.0 NIN like protein 7 (.1) Potri.002G009700 [exp] 418 / 9e-131 AT1G20640 824 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.005G251700 [exp] 411 / 3e-128 AT4G35270 739 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.001G087900 [exp] 402 / 2e-124 AT4G24020 991 / 0.0 NIN like protein 7 (.1) Potri.009G166932 [exp] 373 / 1e-113 AT4G35270 874 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.004G205500 [exp] 361 / 3e-109 AT4G35270 829 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.016G042900 [exp] 358 / 3e-108 AT4G35270 572 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166666 [exp] 352 / 3e-106 AT4G35270 702 / 0.0 Plant regulator RWP-RK family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019368 [exp] 984 / 0 AT2G43500 764 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10008143 [exp] 864 / 0 AT3G59580 769 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10012257 [exp] 380 / 5e-117 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10016018 [exp] 378 / 3e-116 AT1G76350 775 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10003199 [exp] 380 / 5e-116 AT4G24020 953 / 0.0 NIN like protein 7 (.1) Lus10014428 [exp] 364 / 7e-112 AT4G35270 659 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10023930 [exp] 358 / 1e-109 AT4G35270 669 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10023049 [exp] 355 / 3e-108 AT4G24020 783 / 0.0 NIN like protein 7 (.1) Lus10001811 [exp] 255 / 6e-75 AT1G64530 590 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10030744 [exp] 256 / 4e-73 AT1G20640 427 / 1e-138 Plant regulator RWP-RK family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain CL0072 [poplar] [flax] PF02042 [poplar] [flax] RWP-RK RWP-RK domain
Representative CDS sequence Show only first row Show all	>Potri.007G133400.4 pacid=42766551 polypeptide=Potri.007G133400.4.p locus=Potri.007G133400 ID=Potri.007G133400.4.v4.1 annot-version=v4.1 ATGGAGAACTCCTTCTCGTCAAAAGAAAAGGGGATGGGTTATTGGGCTTCACCAAGAGCTCAGATGGATAGTGTCACAACTTTCGATGGTGCTCCAAGGA ATTCATTTTTTGAGGACCCATTCAACAGTTTTTCAGAGCTTATGAATTTTGATATGTATGCTGGATGGTGCAACAACTCATCAGCTATGGATCAAATGCT TGCCCCCTATGGAACGCCATCTTTTCCTTCGACATCCTATCCATCCTTTGATGCAGGAAGTTTTGCAGAACAAAATTCTGCTTCAATACAGGAAACAATA AATGCTGCTGGGACTTCTTACAATGGTGGAGATAAAGTGATGCTTCAGCAAACAAATTCCCATTTTGGTTGTCCCTCAGATTCAATTGATGCTGATGATT TGGGTGCGAAACACAGTAATGGAGCCGGTCAGCAAAACCATTTCCCAAACACAACACACTATATTATGTCACAGCCAGTTGGGCCTTCACTAGATGAGAG GATGCTAAGGGCATTATCCCTGTTGAAGGTTTCATATGGAGGGGGTATTTTGGCACAAGTATGGGTTCCCATAAGGAGTGGGGATCAATACATGTTAAGC ACTTCAGAGCAACCATACTTGCTTGATCAAATGCTAGCAGGGTTCCGAGAAGTGTCTAGAACATTTACTTTCTCTGCAGAAGTGAAGCCTGGTGTGCCTC TAGGACTTCCTGGTCGTGTATTCATTTCCAAAGTTCCAGAGTGGACTTCAAATGTAAGATATTATCGCAAGGCCGAATACTTGCGGGCAAAGCATGCAGT TGATCATGAAGTCCGGGGCTCTTTTGCATTACCGATCTTTGATCCTGATGAGATGTCCTGCTGTGCTGTTCTGGAACTTGTCACTGTTAAGGAGAAACCA GATTTTGATTCAGAGATGGAAAATGTTTGCCATGCGCTCGAGGCTGTGAACTTAAGGAGCACTGCACCTCCTCGACTTCTTCCTCAGTGTCTCTCAAGCA ACAAAAGAGCTGCCTTGTCTGAAATAGCTGATGTTCTACGAGCTGTATGCCATGCACATAGATTGCCACTGGCTCTTACGTGGATGCCTTGCAATTATAC TGAGGAAGCTGTTGATGAAATCATAAAAGTGCGTGTCAAGGAAGCCAATTCAAGGTCAAGTGGTAAATGTATCTTGTGCATTGAAGGTACAGCTTGCTAT GTGAATGACAGAGAGATGCAAGGTTTTGTGCATGCGTGTGCTGAACATTATATTGAGGAAGGGCAAGGTATAGCTGGAAAAGCAGTGCAATCAAATCATC CCTTCTTCTTCCCTGATGTGAAGACATATGATATAACTGAGTATCCACTTGTTCATCATGCACGCAAGTATGGTCTGAATGCTGCAGTTGCAATCAGGCT AAGAAGCACCTACACTGGTGATGATGACTATATTTTAGAGCTCTTTCTCCCTGTCAATATAAAGGAGAGTTCAGACCAGCAACTCCTGTTGAACAACCTC TCAGGTACCATGCAGAGAATTTGTAAGAGTTTGAGAACAGTTTCAGATACAGAATTTGCTGGACAGGAATGTTCTGAAGTTGGGTTGCCAAAGGAAGCAG TGCCAAGCTTCCAACCAATGTCCATATCAAATGGAAGCTCTCAAACTGCATTATCAGAAGGAAACTTGAACTCGGCTGCCAAGATGCCTCTTAATGTGTG TAGTTCAAAAAATGATCAAATAGAATCAAATAGCTCTAACGAACAGACAACGAGTGGATCTAGAAGACAGGTGGAGAAAAAGAGAAGCACAGCGGAGAAA ACTGTGAGCTTGAGCGTTCTTCAGCAATACTTTTCTGGAAGTCTCAAGGATGCTGCCAAAAGCATTGGTGTTTGCCCCACAACACTGAAGAGAATTTGCA GACAACATGGAATATCCAGATGGCCATCCCGAAAGATAAACAAGGTGAACCGCTCATTAAGAAAAATACAGACCGTGCTTGACTCTGTTCAGGGGGTGGA AGGAGGGCTGAAATTTGATCCAACCACAGGTGGTTTTGTAGCAGGGGGCTCCATGAATCAAGAATTTGATCATCGAAATGGTTTTGTGTTTCAAGCAAAA AACCTATCCAATGGAAATTCTGAACCAGCTAACCACGATGTAGTTTCTGTACTTCCGGCTTCTTGTACTGATGGAAATAATTCTACTGTTAAAGTTGAAG AGGATGAATGTTGCATAGGTAGCGGGGGAATGTTAAAGGAGTGTAGTGTTCATGTGATTGATTGCAGTGCAGATTCCAAGTCAGTTGCAATAGATGCTGG ATTATGTGAACAGACTAGCTTTGGCTCTGGATCTTGGGCTTGTCTCGAGATTGACCCCCCAGGTTCTTTTGCAAAAGCAGGCAACATAGGAGGCATGAAA AATGGCGGTATTATACTAGAGAACTCGGACTCCCGCATTGTGCCTCGAAGCTCACTCCCCTTTGTTGCTGCTCAGGAGATGGATACCAAAATGGAGGGTG ATGATGGAAATGTAGAACGTAACCAGCCTACTTGTTCAAGCATGACCGACTCATCAAACAGCTCTGGTTCAATTATGCATGGCAGCATATCAAGCTCTCC GAGCTTCGAGGAGAGGAAGCATTCAGAAGAGAAAACTAGTTTTGGTGATGGTGATTTAAAAATTACTGTAAAAGCCAGGTACAGAGAAGATATAATACGA TTCAAATTTGATCCATCAGCAGCAGGATGTTTCCAACTCTACGAAGAAGTATCAAAGAGGTTCAAATTGCAAACTGGAACATTCCAGCTCAAGTATCTAG ATGACGAAGAGGAGTGGGTATTGTTGGTGAGCGACTCTGACTTGCTGGAGTGTCTGGAGATAATGGAATATGTTGGGACTCGTAGTGTGAAGTTCCTTGT TCGTGACACGCCTTTTGCTATGGGAAGCTCAGACAGCAGCAGTTGCTTTTTGACGGGAAGATCCTAA
AA sequence Show only first row Show all	>Potri.007G133400.4 pacid=42766551 polypeptide=Potri.007G133400.4.p locus=Potri.007G133400 ID=Potri.007G133400.4.v4.1 annot-version=v4.1 MENSFSSKEKGMGYWASPRAQMDSVTTFDGAPRNSFFEDPFNSFSELMNFDMYAGWCNNSSAMDQMLAPYGTPSFPSTSYPSFDAGSFAEQNSASIQETI NAAGTSYNGGDKVMLQQTNSHFGCPSDSIDADDLGAKHSNGAGQQNHFPNTTHYIMSQPVGPSLDERMLRALSLLKVSYGGGILAQVWVPIRSGDQYMLS TSEQPYLLDQMLAGFREVSRTFTFSAEVKPGVPLGLPGRVFISKVPEWTSNVRYYRKAEYLRAKHAVDHEVRGSFALPIFDPDEMSCCAVLELVTVKEKP DFDSEMENVCHALEAVNLRSTAPPRLLPQCLSSNKRAALSEIADVLRAVCHAHRLPLALTWMPCNYTEEAVDEIIKVRVKEANSRSSGKCILCIEGTACY VNDREMQGFVHACAEHYIEEGQGIAGKAVQSNHPFFFPDVKTYDITEYPLVHHARKYGLNAAVAIRLRSTYTGDDDYILELFLPVNIKESSDQQLLLNNL SGTMQRICKSLRTVSDTEFAGQECSEVGLPKEAVPSFQPMSISNGSSQTALSEGNLNSAAKMPLNVCSSKNDQIESNSSNEQTTSGSRRQVEKKRSTAEK TVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLRKIQTVLDSVQGVEGGLKFDPTTGGFVAGGSMNQEFDHRNGFVFQAK NLSNGNSEPANHDVVSVLPASCTDGNNSTVKVEEDECCIGSGGMLKECSVHVIDCSADSKSVAIDAGLCEQTSFGSGSWACLEIDPPGSFAKAGNIGGMK NGGIILENSDSRIVPRSSLPFVAAQEMDTKMEGDDGNVERNQPTCSSMTDSSNSSGSIMHGSISSSPSFEERKHSEEKTSFGDGDLKITVKARYREDIIR FKFDPSAAGCFQLYEEVSKRFKLQTGTFQLKYLDDEEEWVLLVSDSDLLECLEIMEYVGTRSVKFLVRDTPFAMGSSDSSSCFLTGRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43500		NLP8	Plant regulator RWP-RK family ...		Potri.007G133400 [exp]	0	1
AT1G68940			Armadillo/beta-catenin-like re...		Potri.003G201000 [exp]	1.00	0.9231
AT4G34890		ATXDH1	xanthine dehydrogenase 1 (.1)		Potri.009G054600 [exp]	1.41	0.9226
AT1G06650			2-oxoglutarate (2OG) and Fe(II...		Potri.011G156200 [exp]	2.00	0.8991
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G232400 [exp]	4.24	0.8962
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Potri.003G104000 [exp]	6.32	0.8898
AT5G64550			loricrin-related (.1)		Potri.003G023300 [exp]	8.88	0.8401
AT2G30990			Protein of unknown function (D...		Potri.014G142800 [exp]	9.94	0.8907
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Potri.001G024600 [exp]	10.58	0.8851
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.012G033500 [exp]	11.61	0.8995
AT3G46540			ENTH/VHS family protein (.1)		Potri.001G239200 [exp]	14.31	0.8990

Compare expression of checked genes

Potri.007G133400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.